Machine learning prediction for mortality of patients diagnosed with COVID-19: a nationwide Korean cohort study

被引:138
作者
An, Chansik [1 ]
Lim, Hyunsun [1 ]
Kim, Dong-Wook [2 ]
Chang, Jung Hyun [1 ,3 ]
Choi, Yoon Jung [1 ,4 ]
Kim, Seong Woo [5 ]
机构
[1] Natl Hlth Insurance Serv Ilsan Hosp, Res Inst, Goyang, South Korea
[2] Natl Hlth Insurance Serv, Dept Big Data, Wonju, South Korea
[3] Natl Hlth Insurance Serv Ilsan Hosp, Dept Otolaryngol Head & Neck Surg, Goyang, South Korea
[4] Yonsei Univ, Coll Med, Yongin Severance Hosp, Dept Pathol, Yongin, South Korea
[5] Natl Hlth Insurance Serv Ilsan Hosp, Dept Phys Med & Rehabil, Goyang, South Korea
关键词
PERSONAL PROTECTIVE EQUIPMENT; STATINS;
D O I
10.1038/s41598-020-75767-2
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];
摘要
The rapid spread of COVID-19 has resulted in the shortage of medical resources, which necessitates accurate prognosis prediction to triage patients effectively. This study used the nationwide cohort of South Korea to develop a machine learning model to predict prognosis based on sociodemographic and medical information. Of 10,237 COVID-19 patients, 228 (2.2%) died, 7772 (75.9%) recovered, and 2237 (21.9%) were still in isolation or being treated at the last follow-up (April 16, 2020). The Cox proportional hazards regression analysis revealed that age>70, male sex, moderate or severe disability, the presence of symptoms, nursing home residence, and comorbidities of diabetes mellitus (DM), chronic lung disease, or asthma were significantly associated with increased risk of mortality (p <= 0.047). For machine learning, the least absolute shrinkage and selection operator (LASSO), linear support vector machine (SVM), SVM with radial basis function kernel, random forest (RF), and k-nearest neighbors were tested. In prediction of mortality, LASSO and linear SVM demonstrated high sensitivities (90.7% [95% confidence interval: 83.3, 97.3] and 92.0% [85.9, 98.1], respectively) and specificities (91.4% [90.3, 92.5] and 91.8%, [90.7, 92.9], respectively) while maintaining high specificities>90%, as well as high area under the receiver operating characteristics curves (0.963 [0.946, 0.979] and 0.962 [0.945, 0.979], respectively). The most significant predictors for LASSO included old age and preexisting DM or cancer; for RF they were old age, infection route (cluster infection or infection from personal contact), and underlying hypertension. The proposed prediction model may be helpful for the quick triage of patients without having to wait for the results of additional tests such as laboratory or radiologic studies, during a pandemic when limited medical resources must be wisely allocated without hesitation.
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页数:11
相关论文
共 37 条
[1]
Determinants of the outcomes of patients with cancer infected with SARS-CoV-2: results from the Gustave Roussy cohort [J].
Albiges, Laurence ;
Foulon, Stephanie ;
Bayle, Arnaud ;
Gachot, Bertrand ;
Pommeret, Fanny ;
Willekens, Christophe ;
Stoclin, Annabelle ;
Merad, Mansouria ;
Griscelli, Frank ;
Lacroix, Ludovic ;
Netzer, Florence ;
Hueso, Thomas ;
Balleyguier, Corinne ;
Ammari, Samy ;
Colomba, Emeline ;
Baciarello, Giulia ;
Perret, Audrey ;
Hollebecque, Antoine ;
Hadoux, Julien ;
Michot, Jean-Marie ;
Chaput, Nathalie ;
Saada, Veronique ;
Hauchecorne, Mathilde ;
Micol, Jean-Baptiste ;
Sun, Roger ;
Valteau-Couanet, Dominique ;
Andre, Fabrice ;
Scotte, Florian ;
Besse, Benjamin ;
Soria, Jean-Charles ;
Barlesi, Fabrice .
NATURE CANCER, 2020, 1 (10) :965-+
[2]
Coronavirus Disease 2019 (COVID-19) Infection and Renin Angiotensin System Blockers [J].
Bavishi, Chirag ;
Maddox, Thomas M. ;
Messerli, Franz H. .
JAMA CARDIOLOGY, 2020, 5 (07) :745-747
[3]
Is Acetylsalicylic Acid a Safe and Potentially Useful Choice for Adult Patients with COVID-19? [J].
Bianconi, Vanessa ;
Violi, Francesco ;
Fallarino, Francesca ;
Pignatelli, Pasquale ;
Sahebkar, Amirhossein ;
Pirro, Matteo .
DRUGS, 2020, 80 (14) :1383-1396
[4]
Statins in coronavirus outbreak: It's time for experimental and clinical studies [J].
Bifulco, Maurizio ;
Gazzerro, Patrizia .
PHARMACOLOGICAL RESEARCH, 2020, 156
[5]
Organ-protective effect of angiotensin-converting enzyme 2 and its effect on the prognosis of COVID-19 [J].
Cheng, Hao ;
Wang, Yan ;
Wang, Gui-Qiang .
JOURNAL OF MEDICAL VIROLOGY, 2020, 92 (07) :726-730
[6]
Teaching Old Drugs New Tricks: Statins for COVID-19? [J].
Fajgenbaum, David C. ;
Rader, Daniel J. .
CELL METABOLISM, 2020, 32 (02) :145-147
[7]
Early prediction of disease progression in COVID-19 pneumonia patients with chest CT and clinical characteristics [J].
Feng, Zhichao ;
Yu, Qizhi ;
Yao, Shanhu ;
Luo, Lei ;
Zhou, Wenming ;
Mao, Xiaowen ;
Li, Jennifer ;
Duan, Junhong ;
Yan, Zhimin ;
Yang, Min ;
Tan, Hongpei ;
Ma, Mengtian ;
Li, Ting ;
Yi, Dali ;
Mi, Ze ;
Zhao, Huafei ;
Jiang, Yi ;
He, Zhenhu ;
Li, Huiling ;
Nie, Wei ;
Liu, Yin ;
Zhao, Jing ;
Luo, Muqing ;
Liu, Xuanhui ;
Rong, Pengfei ;
Wang, Wei .
NATURE COMMUNICATIONS, 2020, 11 (01)
[8]
Personal protective equipment needs in the USA during the COVID-19 pandemic [J].
Gondi, Suhas ;
Beckman, Adam L. ;
Deveau, Nicholas ;
Raja, Ali S. ;
Ranney, Megan L. ;
Popkin, Rachel ;
He, Shuhan .
LANCET, 2020, 395 (10237) :E90-E91
[9]
A Tool for Early Prediction of Severe Coronavirus Disease 2019 (COVID-19): A Multicenter Study Using the Risk Nomogram in Wuhan and Guangdong, China [J].
Gong, Jiao ;
Ou, Jingyi ;
Qiu, Xueping ;
Jie, Yusheng ;
Chen, Yaqiong ;
Yuan, Lianxiong ;
Cao, Jing ;
Tan, Mingkai ;
Xu, Wenxiong ;
Zheng, Fang ;
Shi, Yaling ;
Hu, Bo .
CLINICAL INFECTIOUS DISEASES, 2020, 71 (15) :833-840
[10]
Diabetes is a risk factor for the progression and prognosis of COVID-19 [J].
Guo, Weina ;
Li, Mingyue ;
Dong, Yalan ;
Zhou, Haifeng ;
Zhang, Zili ;
Tian, Chunxia ;
Qin, Renjie ;
Wang, Haijun ;
Shen, Yin ;
Du, Keye ;
Zhao, Lei ;
Fan, Heng ;
Luo, Shanshan ;
Hu, Desheng .
DIABETES-METABOLISM RESEARCH AND REVIEWS, 2020, 36 (07)