Activation of oxygen nucleophiles in enzyme catalysis

被引:32
作者
Anderson, Vernon E. [1 ]
Ruszczycky, Mark W.
Harris, Michael E.
机构
[1] Case Western Reserve Univ, Dept Biochem, Sch Med, Cleveland, OH 44106 USA
[2] Case Western Reserve Univ, Ctr RNA Mol Biol, Sch Med, Cleveland, OH 44106 USA
关键词
D O I
10.1021/cr050281z
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The application of tools developed by physical organic chemists to enzyme reactions to ascertain how the environment of the enzyme active site affects the reactivity of oxygen nucleophiles is reviewed. The three molecular mechanisms of generating enhanced electron density in the reactant state of the nucleophile by altering the coordination and/or bonding of the nucleophile are outlined as follows: desolvation, coordination of the alcohol proton and ionization. The nucleophilic activation of alcohols by enzymes and the spectroscopic characterization of nucleophiles at enzyme active sites are also illustrated.
引用
收藏
页码:3236 / 3251
页数:16
相关论文
共 173 条
[1]   Solvent effects and mechanism for a nucleophilic aromatic substitution from QM/MM simulations [J].
Acevedo, O ;
Jorgensen, WL .
ORGANIC LETTERS, 2004, 6 (17) :2881-2884
[2]   Solvent effects on the SN2 reaction:: Application of the density functional theory-based effective fragment potential method [J].
Adamovic, I ;
Gordon, MS .
JOURNAL OF PHYSICAL CHEMISTRY A, 2005, 109 (08) :1629-1636
[3]   ENERGETIC LIMITS OF PHOSPHOTRANSFER IN THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN-KINASE AS MEASURED BY VISCOSITY EXPERIMENTS [J].
ADAMS, JA ;
TAYLOR, SS .
BIOCHEMISTRY, 1992, 31 (36) :8516-8522
[4]   Kinetic and catalytic mechanisms of protein kinases [J].
Adams, JA .
CHEMICAL REVIEWS, 2001, 101 (08) :2271-2290
[5]  
ADAMS JA, 1993, J BIOL CHEM, V268, P7747
[6]   Crystal structure of a group I intron splicing intermediate [J].
Adams, PL ;
Stahley, MR ;
Gill, ML ;
Kosek, AB ;
Wang, JM ;
Strobel, SA .
RNA, 2004, 10 (12) :1867-1887
[7]   Crystal structure of a self-splicing group I intron with both exons [J].
Adams, PL ;
Stahley, MR ;
Kosek, AB ;
Wang, JM ;
Strobel, SA .
NATURE, 2004, 430 (6995) :45-50
[8]   SOLVATION OF IONS .14. PROTIC-DIPOLAR APROTIC SOLVENT EFFECTS ON RATES OF BIMOLECULAR REACTIONS SOLVENT ACTIVITY COEFFICIENTS OF REACTANTS AND TRANSITION STATES AT 25 DEGREES [J].
ALEXANDE.R ;
KO, ECF ;
PARKER, AJ ;
BROXTON, TJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1968, 90 (19) :5049-&
[9]   REFINED MODEL OF SUGAR BINDING-SITE OF YEAST HEXOKINASE-B [J].
ANDERSON, CM ;
STENKAMP, RE ;
MCDONALD, RC ;
STEITZ, TA .
JOURNAL OF MOLECULAR BIOLOGY, 1978, 123 (02) :207-219
[10]  
ARORA KK, 1991, J BIOL CHEM, V266, P5359