Modelling blood-brain barrier partitioning using Bayesian neural nets

被引:72
作者
Winkler, DA
Burden, FR
机构
[1] CSIRO, Clayton 3169, Australia
[2] Monash Univ, Sch Chem, Monash 3800, Australia
[3] Scimetrics, Blackburn, Australia
关键词
QSAR; blood-brain barrier; ARD; neural net; ADMET; Bayesian methods;
D O I
10.1016/j.jmgm.2004.03.010
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We have employed three families of molecular molecular descriptors, together with Bayesian regularized neural nets, to model the partitioning of a diverse range of drugs and other small molecules across the blood-brain barrier (BBB). The relative efficacy of each descriptors class is compared, and the advantages of flexible, parsimonious, model free mapping methods, like Bayesian neural nets, illustrated. The relative importance of the molecular descriptors for the most predictive BBB model were determined by use of automatic relevance determination (ARD), and compared with the important descriptors from other literature models of BBB partitioning. (C) 2004 Elsevier Inc. All rights reserved.
引用
收藏
页码:499 / 505
页数:7
相关论文
共 36 条
[11]  
CHADHA HS, 1993, J MOL GRAPHICS, V11, P281
[12]   Rapid calculation of polar molecular surface area and its application to the prediction of transport phenomena. 2. Prediction of blood-brain barrier penetration [J].
Clark, DE .
JOURNAL OF PHARMACEUTICAL SCIENCES, 1999, 88 (08) :815-821
[13]   Predicting blood-brain barrier permeation from three-dimensional molecular structure [J].
Crivori, P ;
Cruciani, G ;
Carrupt, PA ;
Testa, B .
JOURNAL OF MEDICINAL CHEMISTRY, 2000, 43 (11) :2204-2216
[14]   A simple model for the prediction of blood-brain partitioning [J].
Feher, M ;
Sourial, E ;
Schmidt, JM .
INTERNATIONAL JOURNAL OF PHARMACEUTICS, 2000, 201 (02) :239-247
[15]   In vitro blood-brain barrier permeability of nevirapine compared to other HIV antiretroviral agents [J].
Glynn, SL ;
Yazdanian, M .
JOURNAL OF PHARMACEUTICAL SCIENCES, 1998, 87 (03) :306-310
[16]  
Greig NH, 1995, NEW CONCEPTS OF A BLOOD-BRAIN BARRIER, P251
[17]   Determinants of passive drug entry into the central nervous system [J].
Habgood, MD ;
Begley, DJ ;
Abbott, NJ .
CELLULAR AND MOLECULAR NEUROBIOLOGY, 2000, 20 (02) :231-253
[18]   HINT - A NEW METHOD OF EMPIRICAL HYDROPHOBIC FIELD CALCULATION FOR COMFA [J].
KELLOGG, GE ;
SEMUS, SF ;
ABRAHAM, DJ .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1991, 5 (06) :545-552
[19]  
Kier LB, 1999, MOL STRUCTURE DESCRI
[20]   A widely applicable set of descriptors [J].
Labute, P .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2000, 18 (4-5) :464-477