Two state behavior in a solvable model of β-hairpin folding

被引:14
作者
Guo, CL
Levine, H
Kessler, DA
机构
[1] Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
[2] Bar Ilan Univ, Dept Phys, Ramat Gan, Israel
关键词
D O I
10.1103/PhysRevLett.84.3490
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Understanding the mechanism of protein secondary structure formation is an essential pare of the protein-folding puzzle. Here we describe a simple model fbr the formation of a beta hairpin, motivated by the fact that folding of a beta hairpin captures much of the basic physics of protein folding. The modeled hairpin is composed of two interacting Gaussian chains with one pairwise (two-body) and two many-body interactions. We show that these many-body interactions, arising from side chain packing: effects, are responsible for producing an "all-or-none" folding transition. We also estimate the (single exponential) folding/unfolding rate via calculating the thermodynamic weight of the "critical" droplet/bubble.
引用
收藏
页码:3490 / 3493
页数:4
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