The anharmonic vibrational potential and relaxation pathways of the amide I and II modes of N-methylacetamide

被引:121
作者
DeFlores, Lauren P. [1 ]
Ganim, Ziad [1 ]
Ackley, Sarah F. [1 ]
Chung, Hoi Sung [1 ]
Tokmakoff, Andrei [1 ]
机构
[1] MIT, Dept Chem, Cambridge, MA 02139 USA
关键词
D O I
10.1021/jp0603334
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We investigate the influence of isotopic substitution and solvation of N-methylacetamide (NMA) on anharmonic vibrational coupling and vibrational relaxation of the amide I and amide II modes. Differences in the anharmonic potential of isotopic derivatives of NMA in D2O and DMSO-d(6) are quantified by extraction of the anharmonic parameters and the transition dipole moment angles from cross-peaks in the two-dimensional infrared (2D-IR) spectra. To interpret the effects of isotopic substitution and solvent interaction on the anharmonic potential, density functional theory and potential energy distribution calculations are performed. It is shown that the origin of anharmonic variation arises from differing local mode contributions to the normal modes of the NMA isotopologues, particularly in amide II. The time domain manifestation of the coupling is the coherent exchange of excitation between amide modes seen as the quantum beats in femtosecond pump-probes. The biphasic behavior of population relaxation of the pump-probe and 2D-IR experiments can be understood by the rapid exchange of strongly coupled modes within the peptide backbone, followed by picosecond dissipation into weakly coupled modes of the bath.
引用
收藏
页码:18973 / 18980
页数:8
相关论文
共 47 条
[21]   Coherent 2D IR spectroscopy:: Molecular structure and dynamics in solution [J].
Khalil, M ;
Demirdöven, N ;
Tokmakoff, A .
JOURNAL OF PHYSICAL CHEMISTRY A, 2003, 107 (27) :5258-5279
[22]   Signatures of vibrational interactions in coherent two-dimensional infrared spectroscopy [J].
Khalil, M ;
Tokmakoff, A .
CHEMICAL PHYSICS, 2001, 266 (2-3) :213-230
[23]   Ab initio calculation of amide carbonyl stretch vibrational frequencies in solution with modified basis sets.: 1.: N-methyl acetamide [J].
Kubelka, J ;
Keiderling, TA .
JOURNAL OF PHYSICAL CHEMISTRY A, 2001, 105 (48) :10922-10928
[24]  
KUCZERA K, 1998, J PHYS CHEM B, V102, P3586
[25]   Non-Gaussian statistics of amide I mode frequency fluctuation of N-methylacetamide in methanol solution:: Linear and nonlinear vibrational spectra [J].
Kwac, K ;
Lee, H ;
Cho, MH .
JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (03) :1477-1490
[26]   Molecular dynamics simulation study of N-methylacetamide in water.: I.: Amide I mode frequency fluctuation [J].
Kwac, K ;
Cho, MH .
JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (04) :2247-2255
[27]   RESONANCE RAMAN-SPECTROSCOPY OF N-METHYLACETAMIDE - OVERTONES AND COMBINATIONS OF THE C-N STRETCH (AMIDE-II') AND EFFECT OF SOLVATION ON THE C=O STRETCH (AMIDE-I) INTENSITY [J].
MAYNE, LC ;
HUDSON, B .
JOURNAL OF PHYSICAL CHEMISTRY, 1991, 95 (08) :2962-2967
[28]   Uncoupled peptide bond vibrations in α-helical and polyproline II conformations of polyalanine peptides [J].
Mikhonin, AV ;
Asher, SA .
JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (07) :3047-3052
[29]   Uncoupled adjacent amide vibrations in small peptides [J].
Mix, G ;
Schweitzer-Stenner, R ;
Asher, SA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (37) :9028-9029
[30]   VIBRATIONAL ANALYSIS OF PEPTIDES, POLYPEPTIDES, AND PROTEINS .1. POLYGLYCINE I [J].
MOORE, WH ;
KRIMM, S .
BIOPOLYMERS, 1976, 15 (12) :2439-2464