DNA nucleoside interaction and identification with carbon nanotubes

被引:147
作者
Meng, Sheng
Maragakis, Paul
Papaloukas, Costas
Kaxiras, Efthimios [1 ]
机构
[1] Harvard Univ, Dept Phys, Cambridge, MA 02138 USA
[2] Harvard Univ, Div Engn & Appl Sci, Cambridge, MA 02138 USA
[3] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[4] Univ Ioannina, Dept Biol Applicat & Technol, Ioannina 45110, Greece
关键词
D O I
10.1021/nl0619103
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We investigate the interaction of individual DNA nucleosides with a carbon nanotube (CNT) in vacuum and in the presence of external gate voltage. We propose a scheme to discriminate between nucleosides on CNTs based on measurement of electronic features through a local probe such as scanning tunneling spectroscopy. We demonstrate through quantum mechanical calculations that these measurements can achieve 100% efficiency in identifying DNA bases. Our results support the practicality of ultrafast DNA sequencing using electrical measurements.
引用
收藏
页码:45 / 50
页数:6
相关论文
共 30 条
[1]  
[Anonymous], 2005, Data Mining Pratical Machine Learning Tools and Techniques
[2]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[3]   LASER MANIPULATION OF ATOMS AND PARTICLES [J].
CHU, S .
SCIENCE, 1991, 253 (5022) :861-866
[4]  
EBBSEN TW, 1997, CARBON NANOTUBES PRE
[5]   MULTIPLE CONFORMATIONAL STATES OF PROTEINS - A MOLECULAR-DYNAMICS ANALYSIS OF MYOGLOBIN [J].
ELBER, R ;
KARPLUS, M .
SCIENCE, 1987, 235 (4786) :318-321
[6]  
Freund J. E., 1998, THESIS LUDWIG MAXIMI
[7]   Simulation of DNA-nanotube interactions [J].
Gao, HJ ;
Kong, Y .
ANNUAL REVIEW OF MATERIALS RESEARCH, 2004, 34 :123-150
[8]   Optical detection of DNA conformational polymorphism on single-walled carbon nanotubes [J].
Heller, DA ;
Jeng, ES ;
Yeung, TK ;
Martinez, BM ;
Moll, AE ;
Gastala, JB ;
Strano, MS .
SCIENCE, 2006, 311 (5760) :508-511
[9]   HELICAL MICROTUBULES OF GRAPHITIC CARBON [J].
IIJIMA, S .
NATURE, 1991, 354 (6348) :56-58
[10]   Detection of DNA hybridization using the near-infrared band-gap fluorescence of single-walled carbon nanotubes [J].
Jeng, ES ;
Moll, AE ;
Roy, AC ;
Gastala, JB ;
Strano, MS .
NANO LETTERS, 2006, 6 (03) :371-375