The FLEXGene repository: Exploiting the fruits of the genome projects by creating a needed resource to face the challenges of the post-genomic era

被引:28
作者
Brizuela, L [1 ]
Richardson, A [1 ]
Marsischky, G [1 ]
Labaer, J [1 ]
机构
[1] Harvard Univ, Sch Med, Dept BCMP, Inst Prote, Boston, MA 02115 USA
关键词
proteomics; recombination cloning; FLEXGene repository; yeast genome;
D O I
10.1016/S0188-4409(02)00372-7
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Thanks to the results of the multiple completed and ongoing genome sequencing projects and to the newly available recombination-based cloning techniques, it is now possible to build gene repositories with no precedent in their composition, formatting, and potential. This new type of gene repository is necessary to address the challenges imposed by the post-genomic era, i.e., experimentation on a genome-wide scale. We are building the FLEXGene (Full Length EXpression-ready) repository. This unique resource will contain clones representing the complete ORFeome of different organisms, including Homo sapiens as well as several pathogens and model organisms. It will consist of a comprehensive, characterized (sequence-verified), and arrayed gene repository. This resource will allow full exploitation of the genomic information by enabling genome-wide scale experimentation at the level of functional/phenotypic assays as well as at the level of protein expression, purification, and analysis. Here we describe the rationale and construction of this resource and focus on the data obtained from the Saccharomyces cerevisiae project. (C) 2002 IMSS. Published by Elsevier Science Inc.
引用
收藏
页码:318 / 324
页数:7
相关论文
共 24 条
  • [1] The genome sequence of Drosophila melanogaster
    Adams, MD
    Celniker, SE
    Holt, RA
    Evans, CA
    Gocayne, JD
    Amanatides, PG
    Scherer, SE
    Li, PW
    Hoskins, RA
    Galle, RF
    George, RA
    Lewis, SE
    Richards, S
    Ashburner, M
    Henderson, SN
    Sutton, GG
    Wortman, JR
    Yandell, MD
    Zhang, Q
    Chen, LX
    Brandon, RC
    Rogers, YHC
    Blazej, RG
    Champe, M
    Pfeiffer, BD
    Wan, KH
    Doyle, C
    Baxter, EG
    Helt, G
    Nelson, CR
    Miklos, GLG
    Abril, JF
    Agbayani, A
    An, HJ
    Andrews-Pfannkoch, C
    Baldwin, D
    Ballew, RM
    Basu, A
    Baxendale, J
    Bayraktaroglu, L
    Beasley, EM
    Beeson, KY
    Benos, PV
    Berman, BP
    Bhandari, D
    Bolshakov, S
    Borkova, D
    Botchan, MR
    Bouck, J
    Brokstein, P
    [J]. SCIENCE, 2000, 287 (5461) : 2185 - 2195
  • [2] Gene Ontology: tool for the unification of biology
    Ashburner, M
    Ball, CA
    Blake, JA
    Botstein, D
    Butler, H
    Cherry, JM
    Davis, AP
    Dolinski, K
    Dwight, SS
    Eppig, JT
    Harris, MA
    Hill, DP
    Issel-Tarver, L
    Kasarskis, A
    Lewis, S
    Matese, JC
    Richardson, JE
    Ringwald, M
    Rubin, GM
    Sherlock, G
    [J]. NATURE GENETICS, 2000, 25 (01) : 25 - 29
  • [3] FLEXGene repository: from sequenced genomes to gene repositories for high-throughput functional biology and proteomics
    Brizuela, L
    Braun, P
    LaBaer, J
    [J]. MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2001, 118 (02) : 155 - 165
  • [4] Exploring the new world of the genome with DNA microarrays
    Brown, PO
    Botstein, D
    [J]. NATURE GENETICS, 1999, 21 (Suppl 1) : 33 - 37
  • [5] Genome sequence of the nematode C-elegans:: A platform for investigating biology
    不详
    [J]. SCIENCE, 1998, 282 (5396) : 2012 - 2018
  • [6] One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    Datsenko, KA
    Wanner, BL
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (12) : 6640 - 6645
  • [7] Life with 6000 genes
    Goffeau, A
    Barrell, BG
    Bussey, H
    Davis, RW
    Dujon, B
    Feldmann, H
    Galibert, F
    Hoheisel, JD
    Jacq, C
    Johnston, M
    Louis, EJ
    Mewes, HW
    Murakami, Y
    Philippsen, P
    Tettelin, H
    Oliver, SG
    [J]. SCIENCE, 1996, 274 (5287) : 546 - &
  • [8] Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    Golub, TR
    Slonim, DK
    Tamayo, P
    Huard, C
    Gaasenbeek, M
    Mesirov, JP
    Coller, H
    Loh, ML
    Downing, JR
    Caligiuri, MA
    Bloomfield, CD
    Lander, ES
    [J]. SCIENCE, 1999, 286 (5439) : 531 - 537
  • [9] Correlation between protein and mRNA abundance in yeast
    Gygi, SP
    Rochon, Y
    Franza, BR
    Aebersold, R
    [J]. MOLECULAR AND CELLULAR BIOLOGY, 1999, 19 (03) : 1720 - 1730
  • [10] DNA cloning using in vitro site-specific recombination
    Hartley, JL
    Temple, GF
    Brasch, MA
    [J]. GENOME RESEARCH, 2000, 10 (11) : 1788 - 1795