Exploration of hitherto-uncultured bacteria from the rhizosphere

被引：74

作者：

da Rocha, Ulisses Nunes ^{[1
,2
]}

van Overbeek, Leo ^{[1
]}

van Elsas, Jan Dirk ^{[2
]}

机构：

[1] Univ Wageningen & Res Ctr, Plant Sci Grp, NL-6708 PB Wageningen, Netherlands

[2] Univ Groningen, Dept Microbial Ecol, Ctr Ecol & Evolutionary Studies, Haren, Netherlands

来源：

FEMS MICROBIOLOGY ECOLOGY | 2009年 / 69卷 / 03期

关键词：

rhizosphere; hitherto-uncultured bacteria; Acidobacteria; Verrucomicrobia; improving culturability; MICROBIAL COMMUNITY STRUCTURE; SOIL BACTERIA; ANALYSIS REVEALS; NATIVE BACTERIA; 16S RDNA; PLANT; DIVERSITY; CULTIVATION; GROWTH; ROOT;

D O I：

10.1111/j.1574-6941.2009.00702.x

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The rhizosphere environment selects a particular microbial community that arises from the one present in bulk soil due to the release of particular compounds in exudates and different opportunities for microbial colonization. During plant-microorganism coevolution, microbial functions supporting plant health and productivity have developed, of which most are described in cultured plant-associated bacteria. This review discusses the state of the art concerning the ecology of the hitherto-uncultured bacteria of the rhizosphere environment, focusing on Acidobacteria, Verrucomicrobia and Planctomycetes. Furthermore, a strategy is proposed to recover bacterial isolates from these taxa from the rhizosphere environment.

引用

页码：313 / 328

页数：16

共 116 条

[1] Transgenic tobacco revealing altered bacterial diversity in the rhizosphere during early plant development [J].

Andreote, Fernando D. ;

Mendes, Rodrigo ;

Dini-Andreote, Francisco ;

Rossetto, Priscilla B. ;

Labate, Carlos A. ;

Pizzirani-Kleiner, Aline A. ;

van Elsas, Jan Dirck ;

Azevedo, Joao L. ;

Araujo, Welington L. .

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2008, 93 (04) :415-424

[2]

[Anonymous], 1904, Arb. Der Dtsch. Landwirtsch. Ges, DOI DOI 10.12691/AEES-1-6-1

[3]

[Anonymous], KOREAN J MICROBIOL

[4] Rhizosphere bacteria containing 1-aminocyclopropane-1-carboxylate deaminase increase yield of plants grown in drying soil via both local and systemic hormone signalling [J].

Belimov, Andrey A. ;

Dodd, Ian C. ;

Hontzeas, Nikos ;

Theobald, Julian C. ;

Safronova, Vera I. ;

Davies, William J. .

NEW PHYTOLOGIST, 2009, 181 (02) :413-423

[5] Site factors affecting black ash ring growth in northern Minnesota [J].

Benedict, Michael A. ;

Frelich, Lee E. .

FOREST ECOLOGY AND MANAGEMENT, 2008, 255 (8-9) :3489-3493

[6] Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi [J].

Berg, G ;

Krechel, A ;

Ditz, M ;

Sikora, RA ;

Ulrich, A ;

Hallmann, J .

FEMS MICROBIOLOGY ECOLOGY, 2005, 51 (02) :215-229

[7] Characterization of the predominant bacterial population of different mangrove rhizosphere soils using 16S rRNA gene-based single-strand conformation polymorphism (SSCP) [J].

Bharathkumar, Srinivasan ;

RameshKumar, N. ;

Paul, Diby ;

Prabavathy, V. R. ;

Nair, Sudha .

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 2008, 24 (03) :387-394

[8] Biodegradation of naphthenic acids by rhizosphere microorganisms [J].

Biryukova, Oxana V. ;

Fedorak, Phillip M. ;

Quideau, Sylvie A. .

CHEMOSPHERE, 2007, 67 (10) :2058-2064

[9] Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates [J].

Bollmann, Annette ;

Lewis, Kim ;

Epstein, Slava S. .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (20) :6386-6390

[10] Candidatus Chloracidobacterium thermophilum:: An aerobic phototrophic acidobacterium [J].

Bryant, Donald A. ;

Costas, Amaya M. Garcia ;

Maresca, Julia A. ;

Chew, Aline Gomez Maqueo ;

Klatt, Christian G. ;

Bateson, Mary M. ;

Tallon, Luke J. ;

Hostetler, Jessica ;

Nelson, William C. ;

Heidelberg, John F. ;

Ward, David M. .

SCIENCE, 2007, 317 (5837) :523-526

← 1 2 3 4 5 6 7 8 9 10 →