Exploration of hitherto-uncultured bacteria from the rhizosphere

被引：74

作者：

da Rocha, Ulisses Nunes ^{[1
,2
]}

van Overbeek, Leo ^{[1
]}

van Elsas, Jan Dirk ^{[2
]}

机构：

[1] Univ Wageningen & Res Ctr, Plant Sci Grp, NL-6708 PB Wageningen, Netherlands

[2] Univ Groningen, Dept Microbial Ecol, Ctr Ecol & Evolutionary Studies, Haren, Netherlands

来源：

FEMS MICROBIOLOGY ECOLOGY | 2009年 / 69卷 / 03期

关键词：

rhizosphere; hitherto-uncultured bacteria; Acidobacteria; Verrucomicrobia; improving culturability; MICROBIAL COMMUNITY STRUCTURE; SOIL BACTERIA; ANALYSIS REVEALS; NATIVE BACTERIA; 16S RDNA; PLANT; DIVERSITY; CULTIVATION; GROWTH; ROOT;

D O I：

10.1111/j.1574-6941.2009.00702.x

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The rhizosphere environment selects a particular microbial community that arises from the one present in bulk soil due to the release of particular compounds in exudates and different opportunities for microbial colonization. During plant-microorganism coevolution, microbial functions supporting plant health and productivity have developed, of which most are described in cultured plant-associated bacteria. This review discusses the state of the art concerning the ecology of the hitherto-uncultured bacteria of the rhizosphere environment, focusing on Acidobacteria, Verrucomicrobia and Planctomycetes. Furthermore, a strategy is proposed to recover bacterial isolates from these taxa from the rhizosphere environment.

引用

页码：313 / 328

页数：16

共 116 条

[21] Community genomics among stratified microbial assemblages in the ocean's interior [J].

DeLong, EF ;

Preston, CM ;

Mincer, T ;

Rich, V ;

Hallam, SJ ;

Frigaard, NU ;

Martinez, A ;

Sullivan, MB ;

Edwards, R ;

Brito, BR ;

Chisholm, SW ;

Karl, DM .

SCIENCE, 2006, 311 (5760) :496-503

[22]

Dunbar J, 1999, APPL ENVIRON MICROB, V65, P1662

[23] Isolation and characterization of soil bacteria that define Teniglobus gen. nov., in the phylum Acidobacteria [J].

Eichorst, Stephanie A. ;

Breznak, John A. ;

Schmidt, Thomas M. .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (08) :2708-2717

[24] Taxonomic diversity of rhizosphere bacteria in golf course putting greens at representative sites in the southeastern United States [J].

Elliott, Monica L. ;

McInroy, J. A. ;

Xiong, K. ;

Kim, J. H. ;

Skipper, H. D. ;

Guertal, E. A. .

HORTSCIENCE, 2008, 43 (02) :514-518

[25] Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria [J].

Ferrari, BC ;

Binnerup, SJ ;

Gillings, M .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (12) :8714-8720

[26] Toward an ecological classification of soil bacteria [J].

Fierer, Noah ;

Bradford, Mark A. ;

Jackson, Robert B. .

ECOLOGY, 2007, 88 (06) :1354-1364

[27] Molecular profiling of rhizosphere microbial communities associated with healthy and diseased black spruce (Picea mariana) seedlings grown in a nursery [J].

Filion, M ;

Hamelin, RC ;

Bernier, L ;

St-Arnaud, M .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 70 (06) :3541-3551

[28] Isolation and characterization of rhizosphere bacteria with potential for biological control of weeds in vineyards [J].

Flores-Vargas, R. D. ;

O'Hara, G. W. .

JOURNAL OF APPLIED MICROBIOLOGY, 2006, 100 (05) :946-954

[29] Isolation of Bacillus strains from the rhizosphere of cereals and in vitro screening for antagonism against phytopathogenic, food-borne pathogenic and spoilage micro-organisms [J].

Földes, T ;

Bánhegyi, I ;

Herpai, Z ;

Varga, L ;

Szigeti, J .

JOURNAL OF APPLIED MICROBIOLOGY, 2000, 89 (05) :840-846

[30] Rhizosphere microbial community and its response to plant species and soil history [J].

Garbeva, P. ;

van Elsas, J. D. ;

van Veen, J. A. .

PLANT AND SOIL, 2008, 302 (1-2) :19-32

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