Glioblastomas acquire myeloid-affiliated transcriptional programs via epigenetic immunoediting to elicit immune evasion

被引:257
作者
Gangoso, Ester [1 ,2 ]
Southgate, Benjamin [1 ,2 ]
Bradley, Leanne [1 ,2 ]
Rus, Stefanie [1 ,2 ]
Galvez-Cancino, Felipe [3 ]
McGivern, Niamh [2 ]
Guc, Esra [7 ]
Kapourani, Chantriolnt-Andreas [1 ,2 ]
Byron, Adam [2 ]
Ferguson, Kirsty M. [1 ,2 ]
Alfazema, Neza [1 ,2 ]
Morrison, Gillian [1 ,2 ]
Grant, Vivien [1 ,2 ]
Blin, Carla [1 ,2 ]
Sou, IengFong [1 ,2 ]
Marques-Torrejon, Maria Angeles [1 ,2 ]
Conde, Lucia [4 ]
Parrinello, Simona [5 ]
Herrero, Javier [4 ]
Beck, Stephan [6 ]
Brandner, Sebastian [8 ,9 ]
Brennan, Paul M. [1 ,2 ]
Bertone, Paul [10 ]
Pollard, Jeffrey W. [7 ]
Quezada, Sergio A. [3 ]
Sproul, Duncan [2 ]
Frame, Margaret C. [2 ]
Serrels, Alan [11 ]
Pollard, Steven M. [1 ,2 ]
机构
[1] Univ Edinburgh, Ctr Regenerat Med, Inst Regenerat & Repair, 5 Little France Dr, Edinburgh EH16 4UU, Midlothian, Scotland
[2] Univ Edinburgh, CRUK Edinburgh Ctr, Inst Genet & Mol Med, Crewe Rd South, Edinburgh EH4 2XR, Midlothian, Scotland
[3] UCL, Res Dept Haematol, Canc Immunol Unit, Canc Inst, London WC1E 6BT, England
[4] UCL, Dept Canc Biol, Sill Lyons Informat Ctr, Canc Inst, London WC1E 6BT, England
[5] UCL, Dept Canc Biol, Samantha Dickson Brain Canc Unit, Canc Inst, London WC1E 6BT, England
[6] UCL, Dept Canc Biol, Med Genom Res Grp, Canc Inst, London WC1E 6BT, England
[7] Univ Edinburgh, Ctr Reprod Hlth, Queens Med Res Inst, Edinburgh Little France Crescent, Edinburgh EH16 4TJ, Midlothian, Scotland
[8] UCL, Div Neuropathol, UCL Queen Sq Inst Neurol, London, England
[9] UCL, Dept Neurodegenerat Dis, UCL Queen Sq Inst Neurol, London, England
[10] Brown Univ, Alpert Med Sch, Dept Med, Providence, RI 02903 USA
[11] Univ Edinburgh, Ctr Inflammat Res, Queens Med Res Inst, Edinburgh Little France Crescent, Edinburgh EH16 4TJ, Midlothian, Scotland
基金
英国医学研究理事会;
关键词
BIOCONDUCTOR PACKAGE; R PACKAGE; PROTEIN; CELLS; SEQ; DISCOVERY; ARRAY; NORMALIZATION; ANNOTATION; RESISTANCE;
D O I
10.1016/j.cell.2021.03.023
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
Glioblastoma multiforme (GBM) is an aggressive brain tumor for which current immunotherapy approaches have been unsuccessful. Here, we explore the mechanisms underlying immune evasion in GBM. By serially transplanting GBM stem cells (GSCs) into immunocompetent hosts, we uncover an acquired capability of GSCs to escape immune clearance by establishing an enhanced immunosuppressive tumor microenvironment. Mechanistically, this is not elicited via genetic selection of tumor subclones, but through an epigenetic immunoediting process wherein stable transcriptional and epigenetic changes in GSCs are enforced following immune attack. These changes launch a myeloid-affiliated transcriptional program, which leads to increased recruitment of tumor-associated macrophages. Furthermore, we identify similar epigenetic and transcriptional signatures in human mesenchymal subtype GSCs. We conclude that epigenetic immunoediting may drive an acquired immune evasion program in the most aggressive mesenchymal GBM subtype by reshaping the tumor immune microenvironment.
引用
收藏
页码:2454 / +
页数:43
相关论文
共 89 条
[21]
A framework for variation discovery and genotyping using next-generation DNA sequencing data [J].
DePristo, Mark A. ;
Banks, Eric ;
Poplin, Ryan ;
Garimella, Kiran V. ;
Maguire, Jared R. ;
Hartl, Christopher ;
Philippakis, Anthony A. ;
del Angel, Guillermo ;
Rivas, Manuel A. ;
Hanna, Matt ;
McKenna, Aaron ;
Fennell, Tim J. ;
Kernytsky, Andrew M. ;
Sivachenko, Andrey Y. ;
Cibulskis, Kristian ;
Gabriel, Stacey B. ;
Altshuler, David ;
Daly, Mark J. .
NATURE GENETICS, 2011, 43 (05) :491-+
[22]
Atropos: specific, sensitive, and speedy trimming of sequencing reads [J].
Didion, John P. ;
Martin, Marcel ;
Collins, Francis S. .
PEERJ, 2017, 5
[23]
AN INTERFERON GAMMA-REGULATED PROTEIN THAT BINDS THE INTERFERON-INDUCIBLE ENHANCER ELEMENT OF MAJOR HISTOCOMPATIBILITY COMPLEX CLASS-I GENES [J].
DRIGGERS, PH ;
ENNIST, DL ;
GLEASON, SL ;
MAK, WH ;
MARKS, MS ;
LEVI, BZ ;
FLANAGAN, JR ;
APPELLA, E ;
OZATO, K .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1990, 87 (10) :3743-3747
[24]
Interferons, immunity and cancer immunoediting [J].
Dunn, Gavin P. ;
Koebel, Catherine M. ;
Schreiber, Robert D. .
NATURE REVIEWS IMMUNOLOGY, 2006, 6 (11) :836-848
[25]
SAMBLASTER: fast duplicate marking and structural variant read extraction [J].
Faust, Gregory G. ;
Hall, Ira M. .
BIOINFORMATICS, 2014, 30 (17) :2503-2505
[26]
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi [J].
Fortin, Jean-Philippe ;
Triche, Timothy J., Jr. ;
Hansen, Kasper D. .
BIOINFORMATICS, 2017, 33 (04) :558-560
[27]
Functional normalization of 450k methylation array data improves replication in large cancer studies [J].
Fortin, Jean-Philippe ;
Labbe, Aurelie ;
Lemire, Mathieu ;
Zanke, Brent W. ;
Hudson, Thomas J. ;
Fertig, Elana J. ;
Greenwood, Celia M. T. ;
Hansen, Kasper D. apy .
GENOME BIOLOGY, 2014, 15 (12)
[28]
Garrison E., 2012, arXiv : 1207.3907
[29]
A flexible R package for nonnegative matrix factorization [J].
Gaujoux, Renaud ;
Seoighe, Cathal .
BMC BIOINFORMATICS, 2010, 11
[30]
Immune profiling of human tumors identifies CD73 as a combinatorial target in glioblastoma [J].
Goswami, Sangeeta ;
Walle, Thomas ;
Cornish, Andrew E. ;
Basu, Sreyashi ;
Anandhan, Swetha ;
Fernandez, Irina ;
Vence, Luis ;
Blando, Jorge ;
Zhao, Hao ;
Yadav, Shalini Singh ;
Ott, Martina ;
Kong, Ling Y. ;
Heimberger, Amy B. ;
de Groot, John ;
Sepesi, Boris ;
Overman, Michael ;
Kopetz, Scott ;
Allison, James P. ;
Pe'er, Dana ;
Sharma, Padmanee .
NATURE MEDICINE, 2020, 26 (01) :39-+