Microarrays and the gene expression profile of a single cell

被引:26
作者
Kawasaki, ES [1 ]
机构
[1] NCI, Ctr Adv Technol, NIH, Bethesda, MD 20892 USA
来源
APPLICATIONS OF BIOINFORMATICS IN CANCER DETECTION | 2004年 / 1020卷
关键词
single cell; microarray; expression profile; laser capture; cancer cell;
D O I
10.1196/annals.1310.010
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
With completion of the human genome sequence, it is now possible to study the expression of the entire human gene complement of similar to30,000-35,000 genes. To accomplish this goal, microarrays have become the leading methodology for the analysis of global gene expression. Improvements in technology have increased the sensitivity of microarrays to the point where it is feasible to study gene expression in a small number of cells and even at the single cell level. A summary of developments in the area of expression profiling in single cells will be described, and the rationale for these types of studies will be presented. In addition, from a biologist's point of view, some bioinformatic challenges of expression analysis of single cells will be discussed.
引用
收藏
页码:92 / 100
页数:9
相关论文
共 66 条
[11]   Single cell expression analysis - pharmacogenomic potential [J].
Dixon, AK ;
Lee, K ;
Richardson, PJ ;
Bell, MI ;
Skynner, MJ .
PHARMACOGENOMICS, 2002, 3 (06) :809-822
[12]   A NOVEL FAMILY OF GENES ENCODING PUTATIVE PHEROMONE RECEPTORS IN MAMMALS [J].
DULAC, C ;
AXEL, R .
CELL, 1995, 83 (02) :195-206
[13]   Single-cell molecular biology [J].
Eberwine, J .
NATURE NEUROSCIENCE, 2001, 4 (Suppl 11) :1155-1156
[14]   mRNA expression analysis of tissue sections and single cells [J].
Eberwine, J ;
Kacharmina, JE ;
Andrews, C ;
Miyashiro, K ;
McIntosh, T ;
Becker, K ;
Barrett, T ;
Hinkle, D ;
Dent, G ;
Marciano, P .
JOURNAL OF NEUROSCIENCE, 2001, 21 (21) :8310-8314
[15]   Analysis of subcellularly localized mRNAs using in situ hybridization, mRNA amplification, and expression profiling [J].
Eberwine, J ;
Belt, B ;
Kacharmina, JE ;
Miyashiro, K .
NEUROCHEMICAL RESEARCH, 2002, 27 (10) :1065-1077
[16]   Laser capture microdissection [J].
EmmertBuck, MR ;
Bonner, RF ;
Smith, PD ;
Chuaqui, RF ;
Zhuang, ZP ;
Goldstein, SR ;
Weiss, RA ;
Liotta, LA .
SCIENCE, 1996, 274 (5289) :998-1001
[17]   Advantages of mRNA amplification for microarray analysis [J].
Feldman, AL ;
Costouros, NG ;
Wang, E ;
Qian, M ;
Marincola, FM ;
Alexander, HR ;
Libutti, SK .
BIOTECHNIQUES, 2002, 33 (04) :906-+
[18]   Analysis of gene expression in single cells [J].
Freeman, TC ;
Lee, K ;
Richardson, PJ .
CURRENT OPINION IN BIOTECHNOLOGY, 1999, 10 (06) :579-582
[19]   Comparative analysis of amplified and nonamplified RNA for hybridization in cDNA microarray [J].
Gomes, LI ;
Silva, RLA ;
Stolf, BS ;
Cristo, EB ;
Hirata, R ;
Soares, FA ;
Reis, LFL ;
Neves, EJ ;
Carvalho, AF .
ANALYTICAL BIOCHEMISTRY, 2003, 321 (02) :244-251
[20]   Neuron-specific age-related decreases in dopamine receptor subtype mRNAs [J].
Hemby, SE ;
Trojanowski, JQ ;
Ginsberg, SD .
JOURNAL OF COMPARATIVE NEUROLOGY, 2003, 456 (02) :176-183