Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy

被引:63
作者
Chevelkov, Veniamin [1 ]
Fink, Uwe [1 ]
Reif, Bernd [1 ,2 ]
机构
[1] Leibniz Forschungsinst Mol Pharmakol FMP, D-13125 Berlin, Germany
[2] Charite, D-10115 Berlin, Germany
关键词
MAS solid-state NMR; Protein dynamics; Order parameter; Relaxation; Slow correlated motion; Perdeuterated proteins; Alpha-spectrin SH3; CHEMICAL-SHIFT ANISOTROPY; NUCLEAR-MAGNETIC-RESONANCE; RELAXATION DISPERSION NMR; SPIN-LATTICE-RELAXATION; SIDE-CHAIN DYNAMICS; MODEL-FREE APPROACH; CRYSTALLINE PROTEIN; PERDEUTERATED PROTEINS; ORDER PARAMETERS; N-15; RELAXATION;
D O I
10.1007/s10858-009-9348-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We present a comprehensive analysis of protein dynamics for a micro-crystallin protein in the solid-state. Experimental data include N-15 T (1) relaxation times measured at two different magnetic fields as well as H-1-N-15 dipole, N-15 CSA cross correlated relaxation rates which are sensitive to the spectral density function J(0) and are thus a measure of T (2) in the solid-state. In addition, global order parameters are included from a H-1,N-15 dipolar recoupling experiment. The data are analyzed within the framework of the extended model-free Clore-Lipari-Szabo theory. We find slow motional correlation times in the range of 5 and 150 ns. Assuming a wobbling in a cone motion, the amplitude of motion of the respective amide moiety is on the order of 10A degrees for the half-opening angle of the cone in most of the cases. The experiments are demonstrated using a perdeuterated sample of the chicken alpha-spectrin SH3 domain.
引用
收藏
页码:197 / 206
页数:10
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