Evidence for C-Cl/C-Br•••π Interactions as an Important Contribution to Protein-Ligand Binding Affinity

被引:238
作者
Matter, Hans [1 ]
Nazare, Marc [1 ]
Guessregen, Stefan [1 ]
Will, David W. [1 ]
Schreuder, Herman [1 ]
Bauer, Armin [1 ]
Urmann, Matthias [1 ]
Ritter, Kurt [1 ]
Wagner, Michael [1 ]
Wehner, Volkmar [1 ]
机构
[1] Sanofi Aventis Deutschland GmbH, Discovery Res Ind Pk Hochst, D-65926 Frankfurt, Germany
关键词
ab initio calculations; halogens; inhibitors; noncovalent interactions; pi interactions; X-RAY CRYSTALLOGRAPHY; MEDICINAL CHEMISTRY; BENZENE DIMER; THROMBIN INHIBITORS; CRYSTAL-STRUCTURES; FLUORINE SCAN; ACTIVE-SITE; FORCE-FIELD; DRUG DESIGN; HALOGEN;
D O I
10.1002/anie.200806219
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Attractive chlorine: Noncovalent interactions between chlorine or bromine atoms and aromatic rings in proteins open up a new method for the manipulation of molecular recognition. Substitution at distinct positions of two factor Xa inhibitors improves the free energy of binding by interaction with a tyrosine unit. The generality of this motif was underscored by multiple crystal structures as well as high-level quantum chemical calculations (see picture). © 2009 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:2911 / 2916
页数:6
相关论文
共 54 条
[11]   Roles of conformational and positional adaptability in structure-based design of TMC125-R165335 (etravirine) and related non-nucleoside reverse transcriptase inhibitors that are highly potent and effective against wild-type and drug-resistant HIV-1 variants [J].
Das, K ;
Clark, AD ;
Lewi, PJ ;
Heeres, J ;
de Jonge, MR ;
Koymans, LMH ;
Vinkers, HM ;
Daeyaert, F ;
Ludovici, DW ;
Kukla, MJ ;
De Corte, B ;
Kavash, RW ;
Ho, CY ;
Ye, H ;
Lichtenstein, MA ;
Andries, K ;
Pauwels, R ;
de Béthune, MP ;
Boyer, PL ;
Clark, P ;
Hughes, SH ;
Janssen, PAJ ;
Arnold, E .
JOURNAL OF MEDICINAL CHEMISTRY, 2004, 47 (10) :2550-2560
[12]   Models of F•H contacts relevant to the binding of fluoroaromatic inhibitors to carbonic anhydrase II [J].
DerHovanessian, A ;
Doyon, JB ;
Jain, A ;
Rablen, PR ;
Sapse, AM .
ORGANIC LETTERS, 1999, 1 (09) :1359-1362
[13]   Organic fluorine hardly ever accepts hydrogen bonds [J].
Dunitz, JD ;
Taylor, R .
CHEMISTRY-A EUROPEAN JOURNAL, 1997, 3 (01) :89-98
[14]   Mechanisms of activation, inhibition and specificity: crystal structures of the NMDA receptor NR1 ligand-binding core [J].
Furukawa, H ;
Gouaux, E .
EMBO JOURNAL, 2003, 22 (12) :2873-2885
[15]   Halogenation of drugs enhances membrane binding and permeation [J].
Gerebtzoff, G ;
Li-Blatter, X ;
Fischer, H ;
Frentzel, A ;
Seelig, A .
CHEMBIOCHEM, 2004, 5 (05) :676-684
[16]   The many roles for fluorine in medicinal chemistry [J].
Hagmann, William K. .
JOURNAL OF MEDICINAL CHEMISTRY, 2008, 51 (15) :4359-4369
[17]   Fragment-based lead discovery using X-ray crystallography [J].
Hartshorn, MJ ;
Murray, CW ;
Cleasby, A ;
Frederickson, M ;
Tickle, IJ ;
Jhoti, H .
JOURNAL OF MEDICINAL CHEMISTRY, 2005, 48 (02) :403-413
[18]   Relibase:: Design and development of a database for comprehensive analysis of protein-ligand interactions [J].
Hendlich, M ;
Bergner, A ;
Günther, J ;
Klebe, G .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 326 (02) :607-620
[19]   STRUCTURE AND PROPERTIES OF BENZENE-CONTAINING MOLECULAR CLUSTERS - NONEMPIRICAL AB-INITIO CALCULATIONS AND EXPERIMENTS [J].
HOBZA, P ;
SELZLE, HL ;
SCHLAG, EW .
CHEMICAL REVIEWS, 1994, 94 (07) :1767-1785
[20]   Potential energy surface for the benzene dimer. Results of ab initio CCSD(T) calculations show two nearly isoenergetic structures: T-shaped and parallel-displaced [J].
Hobza, P ;
Selzle, HL ;
Schlag, EW .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (48) :18790-18794