Protein structure prediction and model quality assessment

被引:62
作者
Kryshtafovych, Andriy [1 ]
Fidelis, Krzysztof [1 ]
机构
[1] Univ Calif Davis, Genome Ctr, Prot Struct Predict Ctr, Davis, CA 95616 USA
关键词
MULTIPLE TEMPLATES; HOMOLOGY MODELS; SEQUENCE; ACCURACY; PROGRESS; SERVER; RECOGNITION; ALIGNMENTS; REFINEMENT; ERRORS;
D O I
10.1016/j.drudis.2008.11.010
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Protein structures have proven to be a crucial piece of information for biomedical research. Of the millions of currently sequenced proteins only a small fraction is experimentally solved for structure and the only feasible way to bridge the gap between sequence and structure data is computational modeling. Half a century has passed since it was shown that the amino acid sequence of a protein determines its shape, but a method to translate the sequence code reliably into the 3D structure still remains to be developed. This review summarizes modern protein structure prediction techniques with the emphasis on comparative modeling, and describes the recent advances in methods for theoretical model quality assessment.
引用
收藏
页码:386 / 393
页数:8
相关论文
共 65 条
[51]   Assessment of CASP7 predictions in the high accuracy template-based modeling category [J].
Read, Randy J. ;
Chavali, Gayatri .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2007, 69 :27-37
[52]   Benchmarking template selection and model quality assessment for high-resolution comparative modelling [J].
Sadowski, M. I. ;
Jones, D. T. .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2007, 69 (03) :476-485
[53]   Progress on modeling of protein structures and interactions [J].
Schueler-Furman, O ;
Wang, C ;
Bradley, P ;
Misura, K ;
Baker, D .
SCIENCE, 2005, 310 (5748) :638-642
[54]   REDUCTIVE CLEAVAGE OF DISULFIDE BRIDGES IN RIBONUCLEASE [J].
SELA, M ;
WHITE, FH ;
ANFINSEN, CB .
SCIENCE, 1957, 125 (3250) :691-692
[55]   Statistical potential for assessment and prediction of protein structures [J].
Shen, Min-Yi ;
Sali, Andrej .
PROTEIN SCIENCE, 2006, 15 (11) :2507-2524
[56]  
Tramontano Anna, 2008, V413, P43
[57]   Prediction of global and local model quality in CASP7 using Pcons and ProQ [J].
Wallner, Bjorn ;
Elofsson, Arne .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2007, 69 :184-193
[58]  
WANG Z, 2008, PROTEINS
[59]   ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins [J].
Wiederstein, Markus ;
Sippl, Manfred J. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W407-W410
[60]   MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information [J].
Wu, Sitao ;
Zhang, Yang .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 72 (02) :547-556