Carbopeptoid folding: Effects of stereochemistry, chain length, and solvent

被引:21
作者
Baron, R [1 ]
Bakowies, D [1 ]
van Gunsteren, WF [1 ]
机构
[1] ETH, Phys Chem Lab, CH-8093 Zurich, Switzerland
关键词
computer chemistry; conformation analysis; molecular dynamics; peptide folding; tetrahydrofurans;
D O I
10.1002/anie.200454114
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Shaping up nicely: Carbopeptoids with THF rings in their backbone show distinct folding behavior depending on chain length, configuration, and solvent polarity. Molecular dynamics simulations of the folding yield averaged proton-proton distances in good agreement with experimental NOE data. They show, however, that a number of folds are important (b-d), whereas NOE data are usually interpreted in terms of single structures (a).
引用
收藏
页码:4055 / 4059
页数:5
相关论文
共 61 条
  • [1] [Anonymous], 1999, ANGEW CHEM, V111, P249
  • [2] Baron R, 2002, HELV CHIM ACTA, V85, P3872, DOI 10.1002/1522-2675(200211)85:11<3872::AID-HLCA3872>3.0.CO
  • [3] 2-O
  • [4] BARON R, IN PRESS J PEPTIDE S
  • [5] Billeter SR, 1996, GROMOS96 MANUAL USER
  • [6] β-Hairpin stability and folding:: Molecular dynamics studies of the first β-hairpin of tendamistat
    Bonvin, AMJJ
    van Gunsteren, WF
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2000, 296 (01) : 255 - 268
  • [7] Folding study of an Aib-rich peptide in DMSO by molecular dynamics simulations
    Bürgi, R
    Daura, X
    Mark, A
    Bellanda, M
    Mammi, S
    Peggion, E
    van Gunsteren, W
    [J]. JOURNAL OF PEPTIDE RESEARCH, 2001, 57 (02): : 107 - 118
  • [8] Sugar amino acids and their uses in designing bioactive molecules
    Chakraborty, TK
    Ghosh, S
    Jayaprakash, S
    [J]. CURRENT MEDICINAL CHEMISTRY, 2002, 9 (04) : 421 - 435
  • [9] An octameric carbopeptoid; Secondary structure in octameric and tetrameric 5-aminomethyl-tetrahydrofuran-2-carboxylates
    Claridge, TDW
    Long, DD
    Hungerford, NL
    Aplin, RT
    Smith, MD
    Marquess, DG
    Fleet, GWJ
    [J]. TETRAHEDRON LETTERS, 1999, 40 (11) : 2199 - 2202
  • [10] Folding and stability of the three-stranded β-sheet peptide betanova:: Insights from molecular dynamics simulations
    Colombo, G
    Roccatano, D
    Mark, AE
    [J]. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2002, 46 (04) : 380 - 392