Prokaryotic photosynthesis and phototrophy illuminated

被引：411

作者：

Bryant, Donald A. ^{[1
]}

Frigaard, Niels-Ulrik

机构：

[1] Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

[2] Univ Copenhagen, Inst Mol Biol & Physiol, DK-1307 Copenhagen K, Denmark

来源：

TRENDS IN MICROBIOLOGY | 2006年 / 14卷 / 11期

基金：

美国国家科学基金会;

关键词：

D O I：

10.1016/j.tim.2006.09.001

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Genome sequencing projects are revealing new information about the distribution and evolution of photosynthesis and phototrophy. Although coverage of the five phyla containing photosynthetic prokaryotes (Chlorobi, Chloroflexi, Cyanobacteria, Proteobacteria and Firmicutes) is limited and uneven, genome sequences are (or soon will be) available for > 100 strains from these phyla. Present knowledge of photosynthesis is almost exclusively based on data derived from cultivated species but metagenomic studies can reveal new organisms with novel combinations of photosynthetic and phototrophic components that have not yet been described. Metagenomics has already shown how the relatively simple phototrophy based upon rhodopsins has spread laterally throughout Archaea, Bacteria and eukaryotes. In this review, we present examples that reflect recent advances in phototroph biology as a result of insights from genome and metagenome sequencing.

引用

页码：488 / 496

页数：9

共 69 条

[11] Community genomics among stratified microbial assemblages in the ocean's interior [J].

DeLong, EF ;

Preston, CM ;

Mincer, T ;

Rich, V ;

Hallam, SJ ;

Frigaard, NU ;

Martinez, A ;

Sullivan, MB ;

Edwards, R ;

Brito, BR ;

Chisholm, SW ;

Karl, DM .

SCIENCE, 2006, 311 (5760) :496-503

[12] Altered expression of two light-dependent genes in a microcystin-lacking mutant of Microcystis aeruginosa PCC 7806 [J].

Dittmann, E ;

Erhard, M ;

Kaebernick, M ;

Scheler, C ;

Neilan, BA ;

von Döhren, H ;

Börner, T .

MICROBIOLOGY-SGM, 2001, 147 :3113-3119

[13] Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome [J].

Dufresne, A ;

Salanoubat, M ;

Partensky, F ;

Artiguenave, F ;

Axmann, IM ;

Barbe, V ;

Duprat, S ;

Galperin, MY ;

Koonin, EV ;

Le Gall, F ;

Makarova, KS ;

Ostrowski, M ;

Oztas, S ;

Robert, C ;

Rogozin, IB ;

Scanlan, DJ ;

de Marsac, NT ;

Weissenbach, J ;

Wincker, P ;

Wolf, YI ;

Hess, WR .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (17) :10020-10025

[14] The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium [J].

Eisen, JA ;

Nelson, KE ;

Paulsen, IT ;

Heidelberg, JF ;

Wu, M ;

Dodson, RJ ;

Deboy, R ;

Gwinn, ML ;

Nelson, WC ;

Haft, DH ;

Hickey, EK ;

Peterson, JD ;

Durkin, AS ;

Kolonay, JL ;

Yang, F ;

Holt, I ;

Umayam, LA ;

Mason, T ;

Brenner, M ;

Shea, TP ;

Parksey, D ;

Nierman, WC ;

Feldblyum, TV ;

Hansen, CL ;

Craven, MB ;

Radune, D ;

Vamathevan, J ;

Khouri, H ;

White, O ;

Gruber, TM ;

Ketchum, KA ;

Venter, JC ;

Tettelin, H ;

Bryant, DA ;

Fraser, CM .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (14) :9509-9514

[15] Architecture of the photosynthetic oxygen-evolving center [J].

Ferreira, KN ;

Iverson, TM ;

Maghlaoui, K ;

Barber, J ;

Iwata, S .

SCIENCE, 2004, 303 (5665) :1831-1838

[16]

Frigaard N., 2006, Complex Intracellular Structures in Prokaryotes, V2, P79, DOI [10.1007/7171_021, DOI 10.1007/7171_021]

[17]

Frigaard Niels-Ulrik, 2006, V25, P201

[18] Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea [J].

Frigaard, NU ;

Martinez, A ;

Mincer, TJ ;

DeLong, EF .

NATURE, 2006, 439 (7078) :847-850

[19] Seeing green bacteria in a new light: genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria [J].

Frigaard, NU ;

Bryant, D .

ARCHIVES OF MICROBIOLOGY, 2004, 182 (04) :265-276

[20] Genetic manipulation of carotenoid biosynthesis in the green sulfur bacterium Chlorobium tepidum [J].

Frigaard, NU ;

Maresca, JA ;

Yunker, CE ;

Jones, AD ;

Bryant, DA .

JOURNAL OF BACTERIOLOGY, 2004, 186 (16) :5210-5220

← 1 2 3 4 5 6 7 →