Protein backbone dynamics through 13C′-13Cα cross-relaxation in NMR spectroscopy

被引:19
作者
Ferrage, Fabien
Pelupessy, Philippe
Cowburn, David
Bodenhausen, Geoffrey
机构
[1] New York Struct Biol Ctr, New York, NY 10027 USA
[2] Ecole Normale Super, CNRS, Dept Chim, F-75231 Paris 05, France
关键词
D O I
10.1021/ja0600577
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Internal dynamics of proteins are usually characterized by the analysis of N-15 relaxation rates that reflect the motions of NHN vectors. It was suggested a decade ago that additional information on backbone motions can be obtained by measuring cross-relaxation rates associated with intra-residue C'C-alpha vectors. Here we propose a new approach to such measurements, based on the observation of the transfer between two-spin orders 2N(z)C'(z) and 2N(z)C(z)(alpha) R. This amounts to " anchoring" the C'(z) and C-z(a) R operators to the N-z term from the amide of the next residue. In combination with symmetrical reconversion, this method greatly reduces various artifacts. The experiment is carried out on human ubiquitin at 284.1 K, where the correlation time is 7.1 ns. The motions of the C'C-alpha vector appear more restricted than those of the NHN vector.
引用
收藏
页码:11072 / 11078
页数:7
相关论文
共 40 条
[1]   Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy [J].
Al-Hashimi, HM .
CHEMBIOCHEM, 2005, 6 (09) :1506-1519
[2]   Anisotropic small amplitude peptide plane dynamics in proteins from residual dipolar couplings [J].
Bernadó, P ;
Blackledge, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (15) :4907-4920
[3]   Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings [J].
Bouvignies, G ;
Bernadó, P ;
Meier, S ;
Cho, K ;
Grzesiek, S ;
Brüschweiler, R ;
Blackledge, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (39) :13885-13890
[4]   NET POLARIZATION TRANSFER VIA A J-ORDERED STATE FOR SIGNAL ENHANCEMENT OF LOW-SENSITIVITY NUCLEI [J].
BURUM, DP ;
ERNST, RR .
JOURNAL OF MAGNETIC RESONANCE, 1980, 39 (01) :163-168
[5]   Temperature dependence of protein backbone motion from carbonyl 13C and amide 15N NMR relaxation [J].
Chang, SL ;
Tjandra, N .
JOURNAL OF MAGNETIC RESONANCE, 2005, 174 (01) :43-53
[6]   DEVIATIONS FROM THE SIMPLE 2-PARAMETER MODEL-FREE APPROACH TO THE INTERPRETATION OF N-15 NUCLEAR MAGNETIC-RELAXATION OF PROTEINS [J].
CLORE, GM ;
SZABO, A ;
BAX, A ;
KAY, LE ;
DRISCOLL, PC ;
GRONENBORN, AM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1990, 112 (12) :4989-4991
[7]  
Cordier F, 1996, J BIOMOL NMR, V7, P163, DOI 10.1007/BF00203827
[8]   Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase [J].
Cornilescu, G ;
Marquardt, JL ;
Ottiger, M ;
Bax, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (27) :6836-6837
[9]   Carbonyl carbon probe of local mobility in C-13,N-15-enriched proteins using high-resolution nuclear magnetic resonance [J].
Dayie, KT ;
Wagner, G .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (33) :7797-7806
[10]   NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW ;
ZHU, G ;
PFEIFER, J ;
BAX, A .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293