Novel opportunities for computational biology and sociology in drug discovery

被引:9
作者
Yao, Lixia [2 ]
Evans, James A. [1 ,3 ]
Rzhetsky, Andrey [3 ,4 ]
机构
[1] Univ Chicago, Dept Sociol, Chicago, IL 60637 USA
[2] Columbia Univ, Dept Biomed Informat, Ctr Computat Biol & Bioinformat, New York, NY 10032 USA
[3] Univ Chicago, Computat Inst, Chicago, IL 60637 USA
[4] Univ Chicago, Dept Med & Pharmacol, Dept Human Genet, Inst Genom & Syst Biol, Chicago, IL 60637 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
FRAGILE-X-SYNDROME; KNOWLEDGE; INNOVATION; NETWORKS; TEXT; ERYTHROPOIETIN; IDENTIFICATION; COLLABORATION; THERAPEUTICS; ANTICOMMONS;
D O I
10.1016/j.tibtech.2009.06.003
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Current drug discovery is impossible without sophisticated modeling and computation. In this review we outline previous advances in computational biology and, by tracing the steps involved in pharmaceutical development, explore a range of novel, high-value opportunities for computational innovation in modeling the biological process of disease and the social process of drug discovery. These opportunities include text mining for new drug leads, modeling molecular pathways and predicting the efficacy of drug cocktails, analyzing genetic overlap between diseases and predicting alternative drug use. Computation can also be used to model research teams and innovative regions and to estimate the value of academy-industry links for scientific and human benefit. Attention to these opportunities could promise punctuated advance and will complement the well-established computational work on which drug discovery currently relies.
引用
收藏
页码:531 / 540
页数:10
相关论文
共 67 条
[1]   Novel statistical tools for monitoring the safety of marketed drugs [J].
Almenoff, J. S. ;
Pattishall, E. N. ;
Gibbs, T. G. ;
DuMouchel, W. ;
Evans, S. J. W. ;
Yuen, N. .
CLINICAL PHARMACOLOGY & THERAPEUTICS, 2007, 82 (02) :157-166
[2]   Text mining and its potential applications in systems biology [J].
Ananiadou, Sophia ;
Kell, Douglas B. ;
Tsujii, Jun-ichi .
TRENDS IN BIOTECHNOLOGY, 2006, 24 (12) :571-579
[3]   Genomic signal processing [J].
Anastassiou, D .
IEEE SIGNAL PROCESSING MAGAZINE, 2001, 18 (04) :8-20
[4]   Computational analysis of the synergy among multiple interacting genes [J].
Anastassiou, Dimitris .
MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1)
[5]  
[Anonymous], INT PROP RIGHTS RES
[6]  
[Anonymous], 1964, MATH THEORY COMMUNIC
[7]  
[Anonymous], 2000, PROTECTING THEIR INT
[8]   Illuminating drug discovery with biological pathways [J].
Apic, G ;
Ignjatovic, T ;
Boyer, S ;
Russell, RB .
FEBS LETTERS, 2005, 579 (08) :1872-1877
[9]  
BAKKER CE, 1994, CELL, V78, P23
[10]   Reverse engineering of regulatory networks in human B cells [J].
Basso, K ;
Margolin, AA ;
Stolovitzky, G ;
Klein, U ;
Dalla-Favera, R ;
Califano, A .
NATURE GENETICS, 2005, 37 (04) :382-390