Mapping the conformational space accessible to catechol-O-methyltransferase

被引:25
作者
Ehler, Andreas [1 ]
Benz, Joerg [1 ]
Schlatter, Daniel [1 ]
Rudolph, Markus G. [1 ]
机构
[1] F Hoffmann La Roche & Co Ltd, Mol Design & Chem Biol, CH-4002 Basel, Switzerland
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2014年 / 70卷
关键词
CRYSTAL-STRUCTURE; BISUBSTRATE INHIBITORS; ACTIVE-SITE; MOLECULAR RECOGNITION; COMT; KINETICS; RNASE; PREORGANIZATION; PHARMACOLOGY; MECHANISM;
D O I
10.1107/S1399004714012917
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Methylation catalysed by catechol-O-methyltransferase (COMT) is the main pathway of catechol neurotransmitter deactivation in the prefrontal cortex. Low levels of this class of neurotransmitters are held to be causative of diseases such as schizophrenia, depression and Parkinson's disease. Inhibition of COMT may increase neurotransmitter levels, thus offering a route for treatment. Structure-based drug design hitherto seems to be based on the closed enzyme conformation. Here, a set of apo, semi-holo, holo and Michaelis form crystal structures are described that define the conformational space available to COMT and that include likely intermediates along the catalytic pathway. Domain swaps and sizeable loop movements around the active site testify to the flexibility of this enzyme, rendering COMT a difficult drug target. The low affinity of the co-substrate S-adenosylmethionine and the large conformational changes involved during catalysis highlight significant energetic investment to achieve the closed conformation. Since each conformation of COMT is a bona fide target for inhibitors, other states than the closed conformation may be promising to address. Crystallographic data for an alternative avenue of COMTinhibition, i.e. locking of the apo state by an inhibitor, are presented. The set of COMT structures may prove to be useful for the development of novel classes of inhibitors.
引用
收藏
页码:2163 / 2174
页数:12
相关论文
共 48 条
[1]   Characterization of catechol glucuronidation in rat liver [J].
Antonio, L ;
Grillasca, JP ;
Taskinen, J ;
Elovaara, E ;
Burchell, B ;
Piet, MH ;
Ethell, B ;
Ouzzine, M ;
Fournel-Gigleux, S ;
Magdalou, J .
DRUG METABOLISM AND DISPOSITION, 2002, 30 (02) :199-207
[2]  
AXELROD J, 1958, J BIOL CHEM, V233, P702
[3]   Kinetics and crystal structure of catechol-O-methyltransferase complex with co-substrate and a novel inhibitor with potential therapeutic application [J].
Bonifácio, MJ ;
Archer, M ;
Rodrigues, ML ;
Matias, PM ;
Learmonth, DA ;
Carrondo, MA ;
Soares-da-Silva, P .
MOLECULAR PHARMACOLOGY, 2002, 62 (04) :795-805
[4]  
COWARD JK, 1972, BIOCHEM PHARMACOL, V21, P1200, DOI 10.1016/0006-2952(72)90114-1
[5]   Improved R-factors for diffraction data analysis in macromolecular crystallography [J].
Diederichs, K ;
Karplus, PA .
NATURE STRUCTURAL BIOLOGY, 1997, 4 (04) :269-275
[6]   A catechol-O-methyltransferase that is essential for auditory function in mice and humans [J].
Du, Xin ;
Schwander, Martin ;
Moresco, Eva Marie Y. ;
Viviani, Pia ;
Haller, Claudia ;
Hildebrand, Michael S. ;
Pak, Kwang ;
Tarantino, Lisa ;
Roberts, Amanda ;
Richardson, Heather ;
Koob, George ;
Najmabadi, Hossein ;
Ryan, Allen F. ;
Smit, Richard J. H. ;
Mueller, Ulrich ;
Beutler, Bruce .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (38) :14609-14614
[7]   Catechol-O-methyltransferase in complex with substituted 3′-deoxyribose bisubstrate inhibitors [J].
Ellermann, Manuel ;
Lerner, Christian ;
Burgy, Guillaume ;
Ehler, Andreas ;
Bissantz, Caterina ;
Jakob-Roetne, Roland ;
Paulini, Ralph ;
Allemann, Oliver ;
Tissot, Heloise ;
Gruenstein, Dan ;
Stihle, Martine ;
Diederich, Francois ;
Rudolph, Markus G. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2012, 68 :253-260
[8]   Molecular Recognition at the Active Site of Catechol-O-methyltransferase (COMT): Adenine Replacements in Bisubstrate Inhibitors [J].
Ellermann, Manuel ;
Paulini, Ralph ;
Jakob-Roetne, Roland ;
Lerner, Christian ;
Borroni, Edilio ;
Roth, Doris ;
Ehler, Andreas ;
Schweizer, W. Bernd ;
Schlatter, Daniel ;
Rudolph, Markus G. ;
Diederich, Francois .
CHEMISTRY-A EUROPEAN JOURNAL, 2011, 17 (23) :6369-6381
[9]   Molecular Recognition at the Active Site of Catechol-O-Methyltransferase: Energetically Favorable Replacement of a Water Molecule Imported by a Bisubstrate Inhibitor [J].
Ellermann, Manuel ;
Jakob-Roetne, Roland ;
Lerner, Christian ;
Borroni, Edilio ;
Schlatter, Daniel ;
Roth, Doris ;
Ehler, Andreas ;
Rudolph, Markus Georg ;
Diederich, Francois .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2009, 48 (48) :9092-9096
[10]   Features and development of Coot [J].
Emsley, P. ;
Lohkamp, B. ;
Scott, W. G. ;
Cowtan, K. .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2010, 66 :486-501