Reaching the protein folding speed limit with large, sub-microsecond pressure jumps

被引:48
作者
Dumont, Charles [1 ]
Emilsson, Tryggvi [2 ]
Gruebele, Martin [1 ,2 ,3 ]
机构
[1] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
[2] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[3] Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USA
基金
美国国家科学基金会;
关键词
TRANSITION-STATE ENSEMBLE; COLD SHOCK PROTEIN; SIMULATION; APPARATUS; DYNAMICS; KINETICS; THERMODYNAMICS; LANDSCAPE; PATHWAYS; COLLAPSE;
D O I
10.1038/nmeth.1336
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Biomolecules are highly pressure-sensitive, but their dynamics upon return to ambient pressure are often too fast to observe with existing approaches. We describe a sample-efficient method capable of large and very fast pressure drops (<1 nanomole, >2,500 atmospheres and <0.7 microseconds). We validated the method by fluorescence-detected refolding of a genetically engineered lambda repressor mutant from its pressure-denatured state. We resolved barrierless structure formation upon return to ambient pressure; we observed a 2.1 +/- 0.7 microsecond refolding time, which is very close to the 'speed limit' for proteins and much faster than the corresponding temperature-jump refolding of the same protein. The ability to experimentally perform a large and very fast pressure drop opens up a new region of the biomolecular energy landscape for atomic-level simulation.
引用
收藏
页码:515 / U70
页数:6
相关论文
共 30 条
[1]   A single-sweep, nanosecond time resolution laser temperature-jump apparatus [J].
Ballew, RM ;
Sabelko, J ;
Reiner, C ;
Gruebele, M .
REVIEW OF SCIENTIFIC INSTRUMENTS, 1996, 67 (10) :3694-3699
[2]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[3]   Urea and guanidinium chloride denature protein L in different ways in molecular dynamics simulations [J].
Camilloni, C. ;
Rocco, A. Guerini ;
Eberini, I. ;
Gianazza, E. ;
Broglia, R. A. ;
Tiana, G. .
BIOPHYSICAL JOURNAL, 2008, 94 (12) :4654-4661
[4]   NEW TECHNIQUE FOR OPTICAL OBSERVATION OF KINETICS OF CHEMICAL-REACTIONS PERTURBED BY SMALL PRESSURE CHANGES [J].
CLEGG, RM ;
ELSON, EL ;
MAXFIELD, BW .
BIOPOLYMERS, 1975, 14 (04) :883-887
[5]   Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution [J].
Duan, Y ;
Kollman, PA .
SCIENCE, 1998, 282 (5389) :740-744
[6]   Solvent-tuning the collapse and helix formation time scales of λ*6-85 [J].
Dumont, Charles ;
Matsumura, Yoshitaka ;
Kim, Seung Joong ;
Li, Jinsong ;
Kondrashkina, Elena ;
Kihara, Hiroshi ;
Gruebele, Martin .
PROTEIN SCIENCE, 2006, 15 (11) :2596-2604
[7]  
EIGEN M, 1963, TECHNIQUES ORGANIC 2, V8, P895
[8]   Ten-microsecond molecular dynamics simulation of a fast-folding WW domain [J].
Freddolino, Peter L. ;
Liu, Feng ;
Gruebele, Martin ;
Schulten, Klaus .
BIOPHYSICAL JOURNAL, 2008, 94 (10) :L75-L77
[9]   Molecular chaperones in cellular protein folding [J].
Hartl, FU .
NATURE, 1996, 381 (6583) :571-580
[10]   Microsecond folding of the cold shock protein measured by a pressure-jump technique [J].
Jacob, M ;
Holtermann, G ;
Perl, D ;
Reinstein, J ;
Schindler, T ;
Geeves, MA ;
Schmid, FX .
BIOCHEMISTRY, 1999, 38 (10) :2882-2891