DNA analysis by mass spectrometry - past, present and future

被引：39

作者：

Tost, Jorg ^{[1
]}

Gut, Ivo Glynne ^{[1
]}

机构：

[1] Ctr Natl Genotypage, F-91057 Evry, France

来源：

JOURNAL OF MASS SPECTROMETRY | 2006年 / 41卷 / 08期

关键词：

DNA; polymorphism; MALDI; sequencing; genotyping;

D O I：

10.1002/jms.1096

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The analysis of deoxyribose nucleic acid (DNA) by mass spectrometry (MS) has evolved to where it can be used to analyze most known types of DNA and ribose nucleic acid (RNA) situations. It can efficiently deal with the analysis of DNA polymorphisms, sequences, haplotypes, human leukocyte antigen (HLA) typing, DNA methylation and RNA expression. Implementations of MS for these forms of DNA analyses are reviewed. The use of DNA analysis by MS is compared with competing technologies. Finally, an overview is given of worthwhile applications where the know-how gained so far could be used for future developments. Copyright (c) 2006 John Wiley & Sons, Ltd.

引用

页码：981 / 995

页数：15

共 123 条

[1] A haplotype map of the human genome [J].

Altshuler, D ;

Brooks, LD ;

Chakravarti, A ;

Collins, FS ;

Daly, MJ ;

Donnelly, P ;

Gibbs, RA ;

Belmont, JW ;

Boudreau, A ;

Leal, SM ;

Hardenbol, P ;

Pasternak, S ;

Wheeler, DA ;

Willis, TD ;

Yu, FL ;

Yang, HM ;

Zeng, CQ ;

Gao, Y ;

Hu, HR ;

Hu, WT ;

Li, CH ;

Lin, W ;

Liu, SQ ;

Pan, H ;

Tang, XL ;

Wang, J ;

Wang, W ;

Yu, J ;

Zhang, B ;

Zhang, QR ;

Zhao, HB ;

Zhao, H ;

Zhou, J ;

Gabriel, SB ;

Barry, R ;

Blumenstiel, B ;

Camargo, A ;

Defelice, M ;

Faggart, M ;

Goyette, M ;

Gupta, S ;

Moore, J ;

Nguyen, H ;

Onofrio, RC ;

Parkin, M ;

Roy, J ;

Stahl, E ;

Winchester, E ;

Ziaugra, L ;

Shen, Y .

NATURE, 2005, 437 (7063) :1299-1320

[2] Mutation detection and typing of polymorphic loci through double-strand conformation analysis [J].

Argüello, JR ;

Little, AM ;

Pay, AL ;

Gallardo, D ;

Rojas, I ;

Marsh, SGE ;

Goldman, JM ;

Madrigal, JA .

NATURE GENETICS, 1998, 18 (02) :192-194

[3] DNA methylation and the regulation of gene transcription [J].

Attwood, JT ;

Yung, RL ;

Richardson, BC .

CELLULAR AND MOLECULAR LIFE SCIENCES, 2002, 59 (02) :241-257

[4] A novel MALDI-TOF based methodology for genotyping single nucleotide polymorphisms [J].

Blondal, T ;

Waage, BG ;

Smarason, SV ;

Jonsson, F ;

Fjalldal, SB ;

Stefansson, K ;

Gulcher, J ;

Smith, AV .

NUCLEIC ACIDS RESEARCH, 2003, 31 (24)

[5] Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease [J].

Botstein, D ;

Risch, N .

NATURE GENETICS, 2003, 33 (Suppl 3) :228-237

[6]

Braun A, 1997, CLIN CHEM, V43, P1151

[7] High-throughput multiplex SNP genotyping with MALDI-TOF mass spectrometry: Practice, problems and promise [J].

Bray, MS ;

Boerwinkle, E ;

Doris, PA .

HUMAN MUTATION, 2001, 17 (04) :296-304

[8] Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays [J].

Brenner, S ;

Johnson, M ;

Bridgham, J ;

Golda, G ;

Lloyd, DH ;

Johnson, D ;

Luo, SJ ;

McCurdy, S ;

Foy, M ;

Ewan, M ;

Roth, R ;

George, D ;

Eletr, S ;

Albrecht, G ;

Vermaas, E ;

Williams, SR ;

Moon, K ;

Burcham, T ;

Pallas, M ;

DuBridge, RB ;

Kirchner, J ;

Fearon, K ;

Mao, J ;

Corcoran, K .

NATURE BIOTECHNOLOGY, 2000, 18 (06) :630-634

[9] The essence of SNPs [J].

Brookes, AJ .

GENE, 1999, 234 (02) :177-186

[10] High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry [J].

Buetow, KH ;

Edmonson, M ;

MacDonald, R ;

Clifford, R ;

Yip, P ;

Kelley, J ;

Little, DP ;

Strausberg, R ;

Koester, H ;

Cantor, CR ;

Braun, A .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (02) :581-584

← 1 2 3 4 5 6 7 8 9 10 →