Construction of a guide-RNA for site-directed RNA mutagenesis utilising intracellular A-to-I RNA editing

被引:77
作者
Fukuda, Masatora [1 ]
Umeno, Hiromitsu [1 ]
Nose, Kanako [1 ]
Nishitarumizu, Azusa [1 ]
Noguchi, Ryoma [1 ]
Nakagawa, Hiroyuki [2 ]
机构
[1] Fukuoka Univ, Dept Chem, Fac Sci, Jonan Ku, 8-19-1 Nanakuma, Fukuoka, Fukuoka 8140180, Japan
[2] Fukuoka Univ, Dept Earth Syst Sci, Fac Sci, Jonan Ku, 8-19-1 Nanakuma, Fukuoka, Fukuoka 8140180, Japan
基金
日本学术振兴会;
关键词
INOSINE RNA; ADENOSINE DEAMINASES; RIBOSE METHYLATION; ADAR2; DIMERIZATION; INFORMATION; MUTATIONS; RECEPTOR; ENZYMES; SYSTEM;
D O I
10.1038/srep41478
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];
摘要
As an alternative to DNA mutagenesis, RNA mutagenesis can potentially become a powerful gene-regulation method for fundamental research and applied life sciences. Adenosine-to-inosine (A-to-I) RNA editing alters genetic information at the transcript level and is an important biological process that is commonly conserved in metazoans. Therefore, a versatile RNA-mutagenesis method can be achieved by utilising the intracellular RNA-editing mechanism. Here, we report novel guide RNAs capable of inducing A-to-I mutations by guiding the editing enzyme, human adenosine deaminase acting on RNA (ADAR). These guide RNAs successfully introduced A-to-I mutations into the target-site, which was determined by the reprogrammable antisense region. In ADAR2-over expressing cells, site-directed RNA editing could also be performed by simply introducing the guide RNA. Our guide RNA framework provides basic insights into establishing a generally applicable RNA-mutagenesis method.
引用
收藏
页数:13
相关论文
共 50 条
[1]
The functions of animal microRNAs [J].
Ambros, V .
NATURE, 2004, 431 (7006) :350-355
[2]
Providing Appropriate Risk Information on Genome Editing for Patients [J].
Araki, Motoko ;
Ishii, Tetsuya .
TRENDS IN BIOTECHNOLOGY, 2016, 34 (02) :86-90
[3]
RNA editing by adenosine deaminases that act on RNA [J].
Bass, BL .
ANNUAL REVIEW OF BIOCHEMISTRY, 2002, 71 :817-846
[4]
Origins and Mechanisms of miRNAs and siRNAs [J].
Carthew, Richard W. ;
Sontheimer, Erik J. .
CELL, 2009, 136 (04) :642-655
[5]
Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides [J].
Cavaille, J ;
Nicoloso, M ;
Bachellerie, JP .
NATURE, 1996, 383 (6602) :732-735
[6]
SnoRNA-guided ribose methylation of rRNA:: structural features of the guide RNA duplex influencing the extent of the reaction [J].
Cavaillé, J ;
Bachellerie, JP .
NUCLEIC ACIDS RESEARCH, 1998, 26 (07) :1576-1587
[7]
Editing of the GluR-B ion channel RNA in vitro by recombinant double-stranded RNA adenosine deaminase [J].
Dabiri, GA ;
Lai, F ;
Drakas, RA ;
Nishikura, K .
EMBO JOURNAL, 1996, 15 (01) :34-45
[8]
Predicting sites of ADAR editing in double-stranded RNA [J].
Eggington, Julie M. ;
Greene, Tom ;
Bass, Brenda L. .
NATURE COMMUNICATIONS, 2011, 2
[9]
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells [J].
Elbashir, SM ;
Harborth, J ;
Lendeckel, W ;
Yalcin, A ;
Weber, K ;
Tuschl, T .
NATURE, 2001, 411 (6836) :494-498
[10]
Improved design of hammerhead ribozyme for selective digestion of target RNA through recognition of site-specific adenosine-to-inosine RNA editing [J].
Fukuda, Masatora ;
Kurihara, Kei ;
Yamaguchi, Shota ;
Oyama, Yui ;
Deshimaru, Masanobu .
RNA, 2014, 20 (03) :392-405