Genome Sequence of the Anaerobic, Thermophilic, and Cellulolytic Bacterium "Anaerocellum thermophilum" DSM 6725

被引:61
作者
Kataeva, Irina A. [1 ,4 ]
Yang, Sung-Jae [1 ,4 ]
Dam, Phuongan [1 ,3 ,4 ]
Poole, Farris L., II [1 ]
Yin, Yanbin [1 ,3 ,4 ]
Zhou, Fengfeng [1 ,3 ,4 ]
Chou, Wen-chi [1 ,3 ,4 ]
Xu, Ying [1 ,3 ,4 ]
Goodwin, Lynne [6 ]
Sims, David R. [6 ]
Detter, John C. [6 ]
Hauser, Loren J. [5 ]
Westpheling, Janet [2 ,4 ]
Adams, Michael W. W. [1 ,4 ]
机构
[1] Univ Georgia, Dept Biochem & Mol Biol, Athens, GA 30602 USA
[2] Univ Georgia, Dept Genet, Athens, GA 30602 USA
[3] Univ Georgia, Inst Bioinformat, Athens, GA 30602 USA
[4] Oak Ridge Natl Lab, BioEnergy Sci Ctr, Oak Ridge, TN 37831 USA
[5] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN 37831 USA
[6] Los Alamos Natl Lab, Joint Genome Inst, Biosci Div Genome Sci B6, Los Alamos, NM 87545 USA
关键词
D O I
10.1128/JB.00256-09
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
"Anaerocellum thermophilum" DSM 6725 is a strictly anaerobic bacterium that grows optimally at 75 degrees C. It uses a variety of polysaccharides, including crystalline cellulose and untreated plant biomass, and has potential utility in biomass conversion. Here we report its complete genome sequence of 2.97 Mb, which is contained within one chromosome and two plasmids (of 8.3 and 3.6 kb). The genome encodes a broad set of cellulolytic enzymes, transporters, and pathways for sugar utilization and compared to those of other saccharolytic, anaerobic thermophiles is most similar to that of Caldicellulosiruptor saccharolyticus DSM 8903.
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页码:3760 / 3761
页数:2
相关论文
共 12 条
[1]  
[Anonymous], P 2006 INT C BIOINF
[2]   Extremely thermophilic microorganisms for biomass conversion: status and prospects [J].
Blumer-Schuette, Sara E. ;
Kataeva, Irina ;
Westpheling, Janet ;
Adams, Michael W. W. ;
Kelly, Robert M. .
CURRENT OPINION IN BIOTECHNOLOGY, 2008, 19 (03) :210-217
[3]   Cloning, sequencing, and sequence analysis of two novel plasmids from the thermophilic anaerobic bacterium Anaerocellum thermophilum [J].
Clausen, A ;
Mikkelsen, MJ ;
Schröder, I ;
Ahring, BK .
PLASMID, 2004, 52 (02) :131-138
[4]   Operon prediction using both genome-specific and general genomic information [J].
Dam, Phuongan ;
Olman, Victor ;
Harris, Kyle ;
Su, Zhengchang ;
Xu, Ying .
NUCLEIC ACIDS RESEARCH, 2007, 35 (01) :288-298
[5]   Base-calling of automated sequencer traces using phred.: II.: Error probabilities [J].
Ewing, B ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :186-194
[6]   Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment [J].
Ewing, B ;
Hillier, L ;
Wendl, MC ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :175-185
[7]   Consed: A graphical tool for sequence finishing [J].
Gordon, D ;
Abajian, C ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :195-202
[8]   Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima [J].
Nelson, KE ;
Clayton, RA ;
Gill, SR ;
Gwinn, ML ;
Dodson, RJ ;
Haft, DH ;
Hickey, EK ;
Peterson, LD ;
Nelson, WC ;
Ketchum, KA ;
McDonald, L ;
Utterback, TR ;
Malek, JA ;
Linher, KD ;
Garrett, MM ;
Stewart, AM ;
Cotton, MD ;
Pratt, MS ;
Phillips, CA ;
Richardson, D ;
Heidelberg, J ;
Sutton, GG ;
Fleischmann, RD ;
Eisen, JA ;
White, O ;
Salzberg, SL ;
Smith, HO ;
Venter, JC ;
Fraser, CM .
NATURE, 1999, 399 (6734) :323-329
[9]   PHYLOGENETIC ANALYSIS OF ANAEROBIC THERMOPHILIC BACTERIA - AID FOR THEIR RECLASSIFICATION [J].
RAINEY, FA ;
WARD, NL ;
MORGAN, HW ;
TOALSTER, R ;
STACKEBRANDT, E .
JOURNAL OF BACTERIOLOGY, 1993, 175 (15) :4772-4779
[10]  
SVETLICHNYI VA, 1990, MICROBIOLOGY+, V59, P598