Self-assembly of a nanoscale DNA box with a controllable lid

被引:1233
作者
Andersen, Ebbe S. [1 ,2 ,3 ]
Dong, Mingdong [1 ,2 ,4 ]
Nielsen, Morten M. [1 ,2 ,3 ]
Jahn, Kasper [1 ,2 ,3 ]
Subramani, Ramesh [1 ,2 ,4 ]
Mamdouh, Wael [1 ,2 ,4 ]
Golas, Monika M. [5 ,8 ]
Sander, Bjoern [6 ,8 ]
Stark, Holger [8 ,9 ]
Oliveira, Cristiano L. P. [2 ,7 ]
Pedersen, Jan Skov [2 ,7 ]
Birkedal, Victoria [2 ]
Besenbacher, Flemming [1 ,2 ,4 ]
Gothelf, Kurt V. [1 ,2 ,7 ]
Kjems, Jorgen [1 ,2 ,3 ]
机构
[1] Aarhus Univ, Danish Natl Res Fdn, Ctr DNA Nanotechnol, DK-8000 Aarhus, Denmark
[2] Aarhus Univ, Interdisciplinary Nanosci Ctr, DK-8000 Aarhus, Denmark
[3] Aarhus Univ, Dept Mol Biol, DK-8000 Aarhus, Denmark
[4] Aarhus Univ, Dept Phys & Astron, DK-8000 Aarhus, Denmark
[5] Aarhus Univ, Water & Salt Res Ctr, Inst Anat, DK-8000 Aarhus, Denmark
[6] Aarhus Univ, Stereol & EM Res Lab, DK-8000 Aarhus, Denmark
[7] Aarhus Univ, Dept Chem, DK-8000 Aarhus, Denmark
[8] Max Planck Inst Biophys Chem, D-37077 Gottingen, Germany
[9] Univ Gottingen, Gottingen Ctr Mol Biol, D-37077 Gottingen, Germany
基金
新加坡国家研究基金会;
关键词
SMALL-ANGLE SCATTERING; NANOSTRUCTURES; JUNCTIONS; ALIGNMENT;
D O I
10.1038/nature07971
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The unique structural motifs and self-recognition properties of DNA can be exploited to generate self-assembling DNA nanostructures of specific shapes using a 'bottom-up' approach(1). Several assembly strategies have been developed for building complex three-dimensional (3D) DNA nanostructures(2-8). Recently, the DNA 'origami' method was used to build two-dimensional addressable DNA structures of arbitrary shape(9) that can be used as platforms to arrange nanomaterials with high precision and specificity(9-13). A long-term goal of this field has been to construct fully addressable 3D DNA nanostructures(14,15). Here we extend the DNA origami method into three dimensions by creating an addressable DNA box 42 x 36 x 36 nm(3) in size that can be opened in the presence of externally supplied DNA 'keys'. We thoroughly characterize the structure of this DNA box using cryogenic transmission electron microscopy, small-angle X-ray scattering and atomic force microscopy, and use fluorescence resonance energy transfer to optically monitor the opening of the lid. Controlled access to the interior compartment of this DNA nanocontainer could yield several interesting applications, for example as a logic sensor for multiple-sequence signals or for the controlled release of nanocargos.
引用
收藏
页码:73 / U75
页数:5
相关论文
共 30 条
[1]   DNA origami design of dolphin-shaped structures with flexible tails [J].
Andersen, Ebbe S. ;
Dong, Mingdong ;
Nielsen, Morten M. ;
Jahn, Kasper ;
Lind-Thomsen, Allan ;
Mamdouh, Wael ;
Gothelf, Kurt V. ;
Besenbacher, Flemming ;
Kjems, Jorgen .
ACS NANO, 2008, 2 (06) :1213-1218
[2]   Assembly and structural analysis of a covalently closed nano-scale DNA cage [J].
Andersen, Felicie F. ;
Knudsen, Bjarne ;
Oliveira, Cristiano Luis Pinto ;
Frohlich, Rikke F. ;
Kruger, Dinna ;
Bungert, Jorg ;
Agbandje-McKenna, Mavis ;
McKenna, Robert ;
Juul, Sissel ;
Veigaard, Christopher ;
Koch, Jorn ;
Rubinstein, John L. ;
Guldbrandtsen, Bernt ;
Hede, Marianne S. ;
Karlsson, Goran ;
Andersen, Anni H. ;
Pedersen, Jan Skov ;
Knudsen, Birgitta R. .
NUCLEIC ACIDS RESEARCH, 2008, 36 (04) :1113-1119
[3]   SYNTHESIS FROM DNA OF A MOLECULE WITH THE CONNECTIVITY OF A CUBE [J].
CHEN, JH ;
SEEMAN, NC .
NATURE, 1991, 350 (6319) :631-633
[4]  
CLEGG RM, 1992, METHOD ENZYMOL, V211, P353
[5]   MOLECULAR-WEIGHT DETERMINATION BY LIGHT SCATTERING [J].
DEBYE, P .
JOURNAL OF PHYSICAL AND COLLOID CHEMISTRY, 1947, 51 (01) :18-32
[6]   Operation of a DNA robot arm inserted into a 2D DNA crystalline substrate [J].
Ding, Baoquan ;
Seeman, Nadrian C. .
SCIENCE, 2006, 314 (5805) :1583-1585
[7]   DNA-nanotube-induced alignment of membrane proteins for NMR structure determination [J].
Douglas, Shawn M. ;
Chou, James J. ;
Shih, William M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (16) :6644-6648
[8]   Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication [J].
Goodman, RP ;
Schaap, IAT ;
Tardin, CF ;
Erben, CM ;
Berry, RM ;
Schmidt, CF ;
Turberfield, AJ .
SCIENCE, 2005, 310 (5754) :1661-1665
[9]   Reconfigurable, braced, three-dimensional DNA nanostructures [J].
Goodman, Russell P. ;
Heilemann, Mike ;
Doose, Soeren ;
Erben, Christoph M. ;
Kapanidis, Achillefs N. ;
Turberfield, Andrew J. .
NATURE NANOTECHNOLOGY, 2008, 3 (02) :93-96
[10]   Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra [J].
He, Yu ;
Ye, Tao ;
Su, Min ;
Zhang, Chuan ;
Ribbe, Alexander E. ;
Jiang, Wen ;
Mao, Chengde .
NATURE, 2008, 452 (7184) :198-U41