DIALIGN: multiple DNA and protein sequence alignment at BiBiServ

被引：174

作者：

Morgenstern, B ^{[1
]}

机构：

[1] Univ Gottingen, Inst Microbiol & Genet, D-37077 Gottingen, Germany

来源：

NUCLEIC ACIDS RESEARCH | 2004年 / 32卷

关键词：

D O I：

10.1093/nar/gkh373

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

DIALIGN is a widely used software tool for multiple DNA and protein sequence alignment. The program combines local and global alignment features and can therefore be applied to sequence data that cannot be correctly aligned by more traditional approaches. DIALIGN is available online through Bielefeld Bioinformatics Server (BiBiServ). The downloadable version of the program offers several new program features. To compare the output of different alignment programs, we developed the program AltAVisT. Our software is available at http://bibiserv.TechFak.Uni-Bielefeld.DE/dialign/.

引用

页码：W33 / W36

页数：4

共 22 条

[1]

Abdeddaïm S, 1997, LECT NOTES COMPUT SC, V1264, P167

[2]

ABDEDDAIM S, 2001, LECT NOTES COMPUTER, V2066, P1

[3] The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences [J].

Brudno, M ;

Steinkamp, R ;

Morgenstern, B .

NUCLEIC ACIDS RESEARCH, 2004, 32 :W41-W44

[4] Fast and sensitive multiple alignment of large genomic sequences -: art. no. 66 [J].

Brudno, M ;

Chapman, M ;

Göttgens, B ;

Batzoglou, S ;

Morgenstern, B .

BMC BIOINFORMATICS, 2003, 4 (1)

[5]

Chain Patrick, 2003, Briefings in Bioinformatics, V4, P105, DOI 10.1093/bib/4.2.105

[6] Rate matrices for analyzing large families of protein sequences [J].

Devauchelle, C ;

Grossmann, A ;

Hénaut, A ;

Holschneider, M ;

Monnerot, M ;

Risler, JL ;

Torrésani, B .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2001, 8 (04) :381-399

[7] Quality assessment of multiple alignment programs [J].

Lassmann, T ;

Sonnhammer, ELL .

FEBS LETTERS, 2002, 529 (01) :126-130

[8] Multiple sequence alignment using partial order graphs [J].

Lee, C ;

Grasso, C ;

Sharlow, MF .

BIOINFORMATICS, 2002, 18 (03) :452-464

[9] An exact solution for the segment-to-segment multiple sequence alignment problem [J].

Lenhof, HP ;

Morgenstern, B ;

Reinert, K .

BIOINFORMATICS, 1999, 15 (03) :203-210

[10] Comparison of genomic DNA sequences: solved and unsolved problems [J].

Miller, W .

BIOINFORMATICS, 2001, 17 (05) :391-397

← 1 2 3 →