Structure, function and evolution of multidomain proteins

被引:292
作者
Vogel, C [1 ]
Bashton, M [1 ]
Kerrison, ND [1 ]
Chothia, C [1 ]
Teichmann, SA [1 ]
机构
[1] MRC, Mol Biol Lab, Cambridge CB2 2QH, England
关键词
D O I
10.1016/j.sbi.2004.03.011
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Proteins are composed of evolutionary units called domains; the majority of proteins consist of at least two domains. These domains and nature of their interactions determine the function of the protein. The roles that combinations of domains play in the formation of the protein repertoire have been found by analysis of domain assignments to genome sequences. Additional findings on the geometry of domains have been gained from examination of three-dimensional protein structures. Future work will require a domain-centric functional classification scheme and efforts to determine structures of domain combinations.
引用
收藏
页码:208 / 216
页数:9
相关论文
共 69 条
[41]   A combined algorithm for genome-wide prediction of protein function [J].
Marcotte, EM ;
Pellegrini, M ;
Thompson, MJ ;
Yeates, TO ;
Eisenberg, D .
NATURE, 1999, 402 (6757) :83-86
[42]   MIPS:: analysis and annotation of proteins from whole genomes [J].
Mewes, HW ;
Amid, C ;
Arnold, R ;
Frishman, D ;
Güldener, U ;
Mannhaupt, G ;
Münsterkötter, M ;
Pagel, P ;
Strack, N ;
Stümpflen, V ;
Warfsmann, J ;
Ruepp, A .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D41-D44
[43]   The InterPro Database, 2003 brings increased coverage and new features [J].
Mulder, NJ ;
Apweiler, R ;
Attwood, TK ;
Bairoch, A ;
Barrell, D ;
Bateman, A ;
Binns, D ;
Biswas, M ;
Bradley, P ;
Bork, P ;
Bucher, P ;
Copley, RR ;
Courcelle, E ;
Das, U ;
Durbin, R ;
Falquet, L ;
Fleischmann, W ;
Griffiths-Jones, S ;
Haft, D ;
Harte, N ;
Hulo, N ;
Kahn, D ;
Kanapin, A ;
Krestyaninova, M ;
Lopez, R ;
Letunic, I ;
Lonsdale, D ;
Silventoinen, V ;
Orchard, SE ;
Pagni, M ;
Peyruc, D ;
Ponting, CP ;
Selengut, JD ;
Servant, F ;
Sigrist, CJA ;
Vaughan, R ;
Zdobnov, EM .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :315-318
[44]   Structural characterization of the human proteome [J].
Müller, A ;
MacCallum, RM ;
Sternberg, MJE .
GENOME RESEARCH, 2002, 12 (11) :1625-1641
[45]  
MURZIN AG, 1995, J MOL BIOL, V247, P536, DOI 10.1016/S0022-2836(05)80134-2
[46]   PROTEIN SUPERFAMILIES AND DOMAIN SUPERFOLDS [J].
ORENGO, CA ;
JONES, DT ;
THORNTON, JM .
NATURE, 1994, 372 (6507) :631-634
[47]   Mapping protein family interactions: Intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast [J].
Park, J ;
Lappe, M ;
Teichmann, SA .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 307 (03) :929-938
[48]   Genome evolution and the evolution of exon-shuffling - a review [J].
Patthy, L .
GENE, 1999, 238 (01) :103-114
[49]   Assembly of cell regulatory systems through protein interaction domains [J].
Pawson, T ;
Nash, P .
SCIENCE, 2003, 300 (5618) :445-452
[50]   Crystal structure of the iron-dependent regulator (IdeR) from Mycobacterium tuberculosis shows both metal binding sites fully occupied [J].
Pohl, E ;
Holmes, RK ;
Hol, WGJ .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 285 (03) :1145-1156