Synthesis and spectroscopic properties of porphyrin-substituted uridine and deoxyuridine

被引:19
作者
Bouamaied, I [1 ]
Stulz, E [1 ]
机构
[1] Univ Basel, Dept Chem, CH-4056 Basel, Switzerland
关键词
porphyrins; nucleosides; cross-coupling; spectroscopy; protecting groups;
D O I
10.1055/s-2004-829541
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
A general synthetic route to porphyrin-substituted uridine and 2'-deoxyuridine using Sonogashira coupling with acetylene porphyrins is presented. Both diphenyl and tetraphenyl porphyrins, as free base or zinc metallated, can be attached to the nucleobase. Selective TBDMS protection of the deoxyribose does not affect the coupling reaction. The substituents on the porphyrins render the conjugates soluble either in organic solvents (carboxy esters) or in water (carboxylates). No electronic communication between the chromophore and the nucleobase occurs, as indicated by UV/Vis spectroscopy. In aqueous solution, the absorption of the porphyrins is substantially lower than in organic solvents.
引用
收藏
页码:1579 / 1583
页数:5
相关论文
共 38 条
[1]   Progress towards single-molecule sequencing: enzymatic synthesis of nucleotide-specifically labeled DNA [J].
Augustin, MA ;
Ankenbauer, W ;
Angerer, B .
JOURNAL OF BIOTECHNOLOGY, 2001, 86 (03) :289-301
[2]   PHOTOINDUCED INTRAENSEMBLE ELECTRON-TRANSFER IN A BASE-PAIRED PORPHYRIN-QUINONE SYSTEM - TIME-RESOLVED EPR SPECTROSCOPY [J].
BERMAN, A ;
IZRAELI, ES ;
LEVANON, H ;
WANG, B ;
SESSLER, JL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (31) :8252-8257
[3]  
BERMAN A, 1995, J AM CHEM SOC, V117, P702
[4]   Deoxyadenosine and thymidine bases held proximal and distal by means of a covalently-linked dimensional analogue of dA center dot dT: Intramolecular vs intermolecular hydrogen bonding [J].
Bhat, B ;
Leonard, NJ ;
Robinson, H ;
Wang, AHJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (44) :10744-10751
[5]   A practical and efficient synthesis of the selective neuronal acetylcholine-gated ion channel agonist (S)-(-)-5-ethynyl-3-(1-methyl-2-pyrrolidinyl)pyridine maleate (SIB-1508Y) [J].
Bleicher, LS ;
Cosford, NDP ;
Herbaut, A ;
McCallum, JS ;
McDonald, IA .
JOURNAL OF ORGANIC CHEMISTRY, 1998, 63 (04) :1109-1118
[6]   Synthesis of aminoglycoside-DNA conjugates [J].
Charles, I ;
Xue, LA ;
Arya, DP .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2002, 12 (09) :1259-1262
[7]   Direct observation of hole transfer through DNA by hopping between adenine bases and by tunnelling [J].
Giese, B ;
Amaudrut, J ;
Köhler, AK ;
Spormann, M ;
Wessely, S .
NATURE, 2001, 412 (6844) :318-320
[8]   Enhancing the catalytic repertoire of nucleic acids. II. Simultaneous incorporation of amino and imidazolyl functionalities by two modified triphosphates during PCR [J].
Gourlain, T ;
Sidorov, A ;
Mignet, N ;
Thorpe, SJ ;
Lee, SE ;
Grasby, JA ;
Williams, DM .
NUCLEIC ACIDS RESEARCH, 2001, 29 (09) :1898-1905
[10]   Ru(II) and Os(II) nucleosides and oligonucleotides: Synthesis and properties [J].
Hurley, DJ ;
Tor, Y .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (14) :3749-3762