Integrated genomic characterization of adrenocortical carcinoma

被引:508
作者
Assie, Guillaume [1 ,2 ,3 ,4 ]
Letouze, Eric [5 ]
Fassnacht, Martin [6 ,8 ]
Jouinot, Anne [1 ,2 ,3 ]
Luscap, Windy [1 ,2 ,3 ]
Barreau, Olivia [1 ,2 ,3 ,4 ]
Omeiri, Hanin [1 ,2 ,3 ]
Rodriguez, Stephanie [1 ,2 ,3 ]
Perlemoine, Karine [1 ,2 ,3 ]
Rene-Corail, Fernande [1 ,2 ,3 ]
Elarouci, Nabila [5 ]
Sbiera, Silviu [6 ,7 ]
Kroiss, Matthias [8 ]
Allolio, Bruno [7 ]
Waldmann, Jens [9 ]
Quinkler, Marcus [10 ]
Mannelli, Massimo [11 ]
Mantero, Franco [12 ]
Papathomas, Thomas [13 ]
De Krijger, Ronald [13 ]
Tabarin, Antoine [14 ,15 ]
Kerlan, Veronique [15 ,16 ]
Baudin, Eric [15 ,17 ]
Tissier, Frederique [1 ,2 ,3 ,18 ]
Dousset, Bertrand [1 ,2 ,3 ,4 ,19 ]
Groussin, Lionel [1 ,2 ,3 ,4 ]
Amar, Laurence [20 ]
Clauser, Eric [21 ]
Bertagna, Xavier [1 ,2 ,3 ,4 ,15 ]
Ragazzon, Bruno [1 ,2 ,3 ]
Beuschlein, Felix [6 ]
Libe, Rossella [1 ,2 ,3 ,4 ,15 ]
de Reynies, Aurelien [5 ]
Bertherat, Jerome [1 ,2 ,3 ,4 ,15 ]
机构
[1] INSERM, Inst Cochin, U1016, Paris, France
[2] CNRS, UMR 8104, Paris, France
[3] Univ Paris 05, Sorbonne Paris Cite, Paris, France
[4] Hop Cochin, AP HP, Dept Endocrinol, Ctr Rare Adrenal Dis, F-75674 Paris, France
[5] Ligue Natl Canc, Programme Cartes Identite Tumeurs CIT, Paris, France
[6] Univ Munich, Klinikum Univ Munchen, Med Klin & Poliklin 4, Munich, Germany
[7] Univ Hosp Wurzburg, Dept Internal Med 1, Endocrine & Diabet Unit, Wurzburg, Germany
[8] Univ Wurzburg, Comprehens Canc Ctr Mainfranken, D-97070 Wurzburg, Germany
[9] Univ Hosp Giessen & Marburg, Marburg, Germany
[10] Charite, Charite Campus Mitte, Dept Clin Epidemiol, D-13353 Berlin, Germany
[11] Univ Florence, Dept Expt & Clin Biomed Sci, Florence, Italy
[12] Univ Padua, Dept Med, Endocrinol Unit, Padua, Italy
[13] Erasmus MC Univ Med Ctr, Josephine Nefkens Inst, Dept Pathol, Rotterdam, Netherlands
[14] Univ Hosp Bordeaux, Dept Endocrinol Diabet & Metab Dis, Bordeaux, France
[15] Rare Adrenal Canc Network COMETE, Paris, France
[16] Univ Hosp Brest, Dept Endocrinol Diabet & Metab Dis, Brest, France
[17] Univ Paris 11, Inst Gustave Roussy, Dept Nucl Med & Endocrine Oncol, Villejuif, France
[18] Univ Paris 06, Hop La Pitie Salpetriere, AP HP, Dept Pathol, Paris, France
[19] Hop Cochin, AP HP, Dept Digest & Endocrine Surg, F-75674 Paris, France
[20] Hop Europeen Georges Pompidou, AP HP, Hypertens Unit, Paris, France
[21] Hop Cochin, AP HP, Oncogenet Lab, F-75674 Paris, France
关键词
LONG NONCODING RNAS; COPY-NUMBER CHANGES; HUMAN CANCER; MOLECULAR CLASSIFICATION; TUMOR-SUPPRESSOR; MUTATIONS; GENE; EXPRESSION; MANAGEMENT; MICRORNA;
D O I
10.1038/ng.2953
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Adrenocortical carcinomas (ACCs) are aggressive cancers originating in the cortex of the adrenal gland(1). Despite overall poor prognosis, ACC outcome is heterogeneous(2,3). We performed exome sequencing and SNP array analysis of 45 ACCs and identified recurrent alterations in known driver genes(4,5) (CTNNB1, TP53, CDKN2A, RB1 and MEN1) and in genes not previously reported in ACC (ZNRF3, DAXX, TERT and MED12), which we validated in an independent cohort of 77 ACCs. ZNRF3, encoding a cell surface E3 ubiquitin ligase(6), was the most frequently altered gene (21%) and is a potential new tumor suppressor gene related to the beta-catenin pathway. Our integrated genomic analyses further identified two distinct molecular subgroups with opposite outcome. The C1A group of ACCs with poor outcome displayed numerous mutations and DNA methylation alterations, whereas the C1B group of ACCs with good prognosis displayed specific deregulation of two microRNA clusters. Thus, aggressive and indolent ACCs correspond to two distinct molecular entities driven by different oncogenic alterations.
引用
收藏
页码:607 / 612
页数:6
相关论文
共 53 条
[31]   Transcriptional profiling enables molecular classification of adrenocortical tumours [J].
Laurell, Cecilia ;
Velazquez-Fernandez, David ;
Lindsten, Kristina ;
Juhlin, Christofer ;
Enberg, Ulla ;
Geli, Janos ;
Hoog, Anders ;
Kjellman, Magnus ;
Lundeberg, Joakim ;
Hamberger, Bertil ;
Larsson, Catharina ;
Nilsson, Peter ;
Backdahl, Martin .
EUROPEAN JOURNAL OF ENDOCRINOLOGY, 2009, 161 (01) :141-152
[32]   Mutational heterogeneity in cancer and the search for new cancer-associated genes [J].
Lawrence, Michael S. ;
Stojanov, Petar ;
Polak, Paz ;
Kryukov, Gregory V. ;
Cibulskis, Kristian ;
Sivachenko, Andrey ;
Carter, Scott L. ;
Stewart, Chip ;
Mermel, Craig H. ;
Roberts, Steven A. ;
Kiezun, Adam ;
Hammerman, Peter S. ;
McKenna, Aaron ;
Drier, Yotam ;
Zou, Lihua ;
Ramos, Alex H. ;
Pugh, Trevor J. ;
Stransky, Nicolas ;
Helman, Elena ;
Kim, Jaegil ;
Sougnez, Carrie ;
Ambrogio, Lauren ;
Nickerson, Elizabeth ;
Shefler, Erica ;
Cortes, Maria L. ;
Auclair, Daniel ;
Saksena, Gordon ;
Voet, Douglas ;
Noble, Michael ;
DiCara, Daniel ;
Lin, Pei ;
Lichtenstein, Lee ;
Heiman, David I. ;
Fennell, Timothy ;
Imielinski, Marcin ;
Hernandez, Bryan ;
Hodis, Eran ;
Baca, Sylvan ;
Dulak, Austin M. ;
Lohr, Jens ;
Landau, Dan-Avi ;
Wu, Catherine J. ;
Melendez-Zajgla, Jorge ;
Hidalgo-Miranda, Alfredo ;
Koren, Amnon ;
McCarroll, Steven A. ;
Mora, Jaume ;
Lee, Ryan S. ;
Crompton, Brian ;
Onofrio, Robert .
NATURE, 2013, 499 (7457) :214-218
[33]   Adrenocortical cancer:: pathophysiology and clinical management [J].
Libe, Rossella ;
Fratticci, Amato ;
Bertherat, Jerome .
ENDOCRINE-RELATED CANCER, 2007, 14 (01) :13-28
[34]   LncRNA loc285194 is a p53-regulated tumor suppressor [J].
Liu, Qian ;
Huang, Jianguo ;
Zhou, Nanjiang ;
Zhang, Ziqiang ;
Zhang, Ali ;
Lu, Zhaohui ;
Wu, Fangting ;
Mo, Yin-Yuan .
NUCLEIC ACIDS RESEARCH, 2013, 41 (09) :4976-4987
[35]   CLINICAL-FEATURES OF ADRENOCORTICAL CARCINOMA, PROGNOSTIC FACTORS, AND THE EFFECT OF MITOTANE THERAPY [J].
LUTON, JP ;
CERDAS, S ;
BILLAUD, L ;
THOMAS, G ;
GUILHAUME, B ;
BERTAGNA, X ;
LAUDAT, MH ;
LOUVEL, A ;
CHAPUIS, Y ;
BLONDEAU, P ;
BONNIN, A ;
BRICAIRE, H .
NEW ENGLAND JOURNAL OF MEDICINE, 1990, 322 (17) :1195-1201
[36]   MED12, the Mediator Complex Subunit 12 Gene, Is Mutated at High Frequency in Uterine Leiomyomas [J].
Makinen, Netta ;
Mehine, Miika ;
Tolvanen, Jaana ;
Kaasinen, Eevi ;
Li, Yilong ;
Lehtonen, Heli J. ;
Gentile, Massimiliano ;
Yan, Jian ;
Enge, Martin ;
Taipale, Minna ;
Aavikko, Mervi ;
Katainen, Riku ;
Virolainen, Elina ;
Bohling, Tom ;
Koski, Taru A. ;
Launonen, Virpi ;
Sjoberg, Jari ;
Taipale, Jussi ;
Vahteristo, Pia ;
Aaltonen, Lauri A. .
SCIENCE, 2011, 334 (6053) :252-255
[37]   The role of microRNA deregulation in the pathogenesis of adrenocortical carcinoma [J].
Ozata, Deniz M. ;
Caramuta, Stefano ;
Velazquez-Fernandez, David ;
Akcakaya, Pinar ;
Xie, Hong ;
Hoog, Anders ;
Zedenius, Jan ;
Backdahl, Martin ;
Larsson, Catharina ;
Lui, Weng-Onn .
ENDOCRINE-RELATED CANCER, 2011, 18 (06) :643-655
[38]   Recurrent Focal Copy-Number Changes and Loss of Heterozygosity Implicate Two Noncoding RNAs and One Tumor Suppressor Gene at Chromosome 3q13.31 in Osteosarcoma [J].
Pasic, Ivan ;
Shlien, Adam ;
Durbin, Adam D. ;
Stavropoulos, Dimitrios J. ;
Baskin, Berivan ;
Ray, Peter N. ;
Novokmet, Ana ;
Malkin, David .
CANCER RESEARCH, 2010, 70 (01) :160-171
[39]   MicroRNA Profiling of Adrenocortical Tumors Reveals miR-483 as a Marker of Malignancy [J].
Patterson, Erin E. ;
Holloway, Alisha K. ;
Weng, Julie ;
Fojo, Tito ;
Kebebew, Electron .
CANCER, 2011, 117 (08) :1630-1639
[40]   DNA Methylation Profiling Identifies Global Methylation Differences and Markers of Adrenocortical Tumors [J].
Rechache, Nesrin S. ;
Wang, Yonghong ;
Stevenson, Holly S. ;
Killian, J. Keith ;
Edelman, Daniel C. ;
Merino, Maria ;
Zhang, Lisa ;
Nilubol, Naris ;
Stratakis, Constantine A. ;
Meltzer, Paul S. ;
Kebebew, Electron .
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, 2012, 97 (06) :E1004-E1013