Site-directed spin labeling of a bacterial chemoreceptor reveals a dynamic, loosely packed transmembrane domain

被引:13
作者
Barnakov, A
Altenbach, C
Barnakova, L
Hubbell, WL
Hazelbauer, GL
机构
[1] Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA
[2] Univ Calif Los Angeles, Jules Stein Eye Inst, Los Angeles, CA 90095 USA
[3] Univ Calif Los Angeles, Dept Chem & Biochem, Los Angeles, CA 90095 USA
关键词
bacterial chemotaxis; transmembrane receptors; membrane proteins; protein dynamics; electron paramagnetic resonance (EPR) spectroscopy;
D O I
10.1110/ps.0202502
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We used site-directed spin labeling and electron paramagnetic resonance spectroscopy to investigate dynamics and helical packing in the four-helix transmembrane domain of the homodimeric bacterial chemo-receptor Trg. We focused on the first transmembrane helix, TM1, particularly on the nine-residue sequence nearest the periplasm, because patterns of disulfide formation between introduced cysteines had identified that segment as the region of closest approach among neighboring trans membra no helices. Along sequence, mobility and accessibility of the introduced spin label were characteristic of loosely packed or solvent-exposed side chains. This was also the case for eight additional positions around the circumference and along the length of TM1. For the continuous nine-residue sequence near the periplasm, mobility and accessibility varied only modestly as a function of position. We conclude that side chains of TM1 that face the interior of the four-helix domain interact with neighboring helices but dynamic movement results in loose packing. Compared to transmembrane segments of other membrane proteins reconstituted into lipid bilayers and characterized by site-directed spin labeling, TM1 of chemoreceptor Trg is the most dynamic and loosely packed. A dynamic, loosely packed chemoreceptor domain can account for many experimental observations about the transmembrane domains of chemoreceptors.
引用
收藏
页码:1472 / 1481
页数:10
相关论文
共 69 条
[1]   fd coat protein structure in membrane environments: Structural dynamics of the loop between the hydrophobic trans-membrane helix and the amphipathic in-plane helix [J].
Almeida, FCL ;
Opella, SJ .
JOURNAL OF MOLECULAR BIOLOGY, 1997, 270 (03) :481-495
[2]   Structural features and light-dependent changes in the sequence 306-322 extending from helix VII to the palmitoylation sites in rhodopsin: A site-directed spin-labeling study [J].
Altenbach, C ;
Cai, KW ;
Khorana, HG ;
Hubbell, WL .
BIOCHEMISTRY, 1999, 38 (25) :7931-7937
[3]   Structural features and light-dependent changes in the cytoplasmic interhelical E-F loop region of rhodopsin: A site-directed spin-labeling study [J].
Altenbach, C ;
Yang, K ;
Farrens, DL ;
Farahbakhsh, ZT ;
Khorana, HG ;
Hubbell, WL .
BIOCHEMISTRY, 1996, 35 (38) :12470-12478
[4]   A COLLISION GRADIENT-METHOD TO DETERMINE THE IMMERSION DEPTH OF NITROXIDES IN LIPID BILAYERS - APPLICATION TO SPIN-LABELED MUTANTS OF BACTERIORHODOPSIN [J].
ALTENBACH, C ;
GREENHALGH, DA ;
KHORANA, HG ;
HUBBELL, WL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (05) :1667-1671
[5]   TRANSMEMBRANE PROTEIN-STRUCTURE - SPIN LABELING OF BACTERIORHODOPSIN MUTANTS [J].
ALTENBACH, C ;
MARTI, T ;
KHORANA, HG ;
HUBBELL, WL .
SCIENCE, 1990, 248 (4959) :1088-1092
[6]   Estimation of inter-residue distances in spin labeled proteins at physiological temperatures: Experimental strategies and practical limitations [J].
Altenbach, C ;
Oh, KJ ;
Trabanino, RJ ;
Hideg, K ;
Hubbell, WL .
BIOCHEMISTRY, 2001, 40 (51) :15471-15482
[7]  
ALVAREZ J, 1987, J BIOL CHEM, V262, P3502
[8]   Signaling domain of the aspartate receptor is a helical hairpin with a localized kinase docking surface: Cysteine and disulfide scanning studies [J].
Bass, RB ;
Coleman, MD ;
Falke, JJ .
BIOCHEMISTRY, 1999, 38 (29) :9317-9327
[9]   Detection of a conserved α-helix in the kinase-docking region of the aspartate receptor by cysteine and disulfide scanning [J].
Bass, RB ;
Falke, JJ .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (39) :25006-25014
[10]   Mutational analysis of a transmembrane segment in a bacterial chemoreceptor [J].
Baumgartner, JW ;
Hazelbauer, GL .
JOURNAL OF BACTERIOLOGY, 1996, 178 (15) :4651-4660