Distinguishing the ORFs from the ELFs: short bacterial genes and the annotation of genomes

被引:60
作者
Ochman, H [1 ]
机构
[1] Univ Arizona, Dept Biochem & Mol Biophys, Tucson, AZ 85721 USA
关键词
D O I
10.1016/S0168-9525(02)02668-9
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A substantial fraction of hypothetical open reading frames (ORFs) in completely sequenced bacterial genomes are short, suggesting that many are not genes but random stretches of DNA. Although it is not feasible to authenticate the coding capacity of all such regions experimentally, comparisons of ORFs in related genomes can expose those that encode functional proteins.
引用
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页码:335 / 337
页数:3
相关论文
共 17 条
[11]  
Nei M, 2000, MOL EVOLUTIONARY PHY
[12]   The KA/KS ratio test for assessing the protein-coding potential of genomic regions:: An empirical and simulation study [J].
Nekrutenko, A ;
Makova, KD ;
Li, WH .
GENOME RESEARCH, 2002, 12 (01) :198-202
[13]   Evaluation of gene-finding programs on mammalian sequences [J].
Rogic, S ;
Mackworth, AK ;
Ouellette, FBF .
GENOME RESEARCH, 2001, 11 (05) :817-832
[14]   CHROMOSOMAL LOCATION AND EVOLUTIONARY RATE VARIATION IN ENTEROBACTERIAL GENES [J].
SHARP, PM ;
SHIELDS, DC ;
WOLFE, KH ;
LI, WH .
SCIENCE, 1989, 246 (4931) :808-810
[15]  
SHARP PM, 1987, MOL BIOL EVOL, V4, P222
[16]   On the total number of genes and their length distribution in complete microbial genomes [J].
Skovgaard, M ;
Jensen, LJ ;
Brunak, S ;
Ussery, D ;
Krogh, A .
TRENDS IN GENETICS, 2001, 17 (08) :425-428
[17]   Gene-finding approaches for eukaryotes [J].
Stormo, GD .
GENOME RESEARCH, 2000, 10 (04) :394-397