Gene essentiality and synthetic lethality in haploid human cells

被引:595
作者
Blomen, Vincent A. [1 ]
Majek, Peter [2 ]
Jae, Lucas T. [1 ]
Bigenzahn, Johannes W. [2 ]
Nieuwenhuis, Joppe [1 ]
Staring, Jacqueline [1 ]
Sacco, Roberto [2 ]
van Diemen, Ferdy R. [1 ]
Olk, Nadine [2 ]
Stukalov, Alexey [2 ]
Marceau, Caleb [3 ]
Janssen, Hans [1 ]
Carette, Jan E. [3 ]
Bennett, Keiryn L. [2 ]
Colinge, Jacques [2 ,4 ]
Superti-Furga, Giulio [2 ,5 ]
Brummelkamp, Thijn R. [1 ,2 ,6 ]
机构
[1] Netherlands Canc Inst, NL-1066 CX Amsterdam, Netherlands
[2] Austrian Acad Sci, CeMM Res Ctr Mol Med, A-1090 Vienna, Austria
[3] Stanford Univ, Dept Microbiol & Immunol, Sch Med, Stanford, CA 94305 USA
[4] Univ Montpellier, Inst Rech Cancerol Montpellier, INSERM, U1194,Inst Reg Canc Montpellier, F-34000 Montpellier, France
[5] Med Univ Vienna, Ctr Physiol & Pharmacol, Vienna, Austria
[6] Canc Genom Ctr CGC Nl, NL-1066 CX Amsterdam, Netherlands
基金
奥地利科学基金会; 欧洲研究理事会;
关键词
SECRETORY PATHWAY; VIRUS ENTRY; YEAST; EXPLORATION; NETWORKS; REPLICATION; MUTANTS; SCREENS; GENOME;
D O I
10.1126/science.aac7557
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Although the genes essential for life have been identified in less complex model organisms, their elucidation in human cells has been hindered by technical barriers. We used extensive mutagenesis in haploid human cells to identify approximately 2000 genes required for optimal fitness under culture conditions. To study the principles of genetic interactions in human cells, we created a synthetic lethality network focused on the secretory pathway based exclusively on mutations. This revealed a genetic cross-talk governing Golgi homeostasis, an additional subunit of the human oligosaccharyltransferase complex, and a phosphatidylinositol 4-kinase beta adaptor hijacked by viruses. The synthetic lethality map parallels observations made in yeast and projects a route forward to reveal genetic networks in diverse aspects of human cell biology.
引用
收藏
页码:1092 / 1096
页数:6
相关论文
共 28 条
[1]   Exploring genetic interactions and networks with yeast [J].
Boone, Charles ;
Bussey, Howard ;
Andrews, Brenda J. .
NATURE REVIEWS GENETICS, 2007, 8 (06) :437-449
[2]   Ebola virus entry requires the cholesterol transporter Niemann-Pick C1 [J].
Carette, Jan E. ;
Raaben, Matthijs ;
Wong, Anthony C. ;
Herbert, Andrew S. ;
Obernosterer, Gregor ;
Mulherkar, Nirupama ;
Kuehne, Ana I. ;
Kranzusch, Philip J. ;
Griffin, April M. ;
Ruthel, Gordon ;
Dal Cin, Paola ;
Dye, John M. ;
Whelan, Sean P. ;
Chandran, Kartik ;
Brummelkamp, Thijn R. .
NATURE, 2011, 477 (7364) :340-U115
[3]   Global gene disruption in human cells to assign genes to phenotypes by deep sequencing [J].
Carette, Jan E. ;
Guimaraes, Carla P. ;
Wuethrich, Irene ;
Blomen, Vincent A. ;
Varadarajan, Malini ;
Sun, Chong ;
Bell, George ;
Yuan, Bingbing ;
Muellner, Markus K. ;
Nijman, Sebastian M. ;
Ploegh, Hidde L. ;
Brummelkamp, Thijn R. .
NATURE BIOTECHNOLOGY, 2011, 29 (06) :542-U108
[4]   Haploid Genetic Screens in Human Cells Identify Host Factors Used by Pathogens [J].
Carette, Jan E. ;
Guimaraes, Carla P. ;
Varadarajan, Malini ;
Park, Annie S. ;
Wuethrich, Irene ;
Godarova, Alzbeta ;
Kotecki, Maciej ;
Cochran, Brent H. ;
Spooner, Eric ;
Ploegh, Hidde L. ;
Brummelkamp, Thijn R. .
SCIENCE, 2009, 326 (5957) :1231-1235
[5]   Drosophila Tempura, a Novel Protein Prenyltransferase α Subunit, Regulates Notch Signaling Via Rab1 and Rab11 [J].
Charng, Wu-Lin ;
Yamamoto, Shinya ;
Jaiswal, Manish ;
Bayat, Vafa ;
Xiong, Bo ;
Zhang, Ke ;
Sandoval, Hector ;
David, Gabriela ;
Gibbs, Stephen ;
Lu, Hsiang-Chih ;
Chen, Kuchuan ;
Giagtzoglou, Nikos ;
Bellen, Hugo J. .
PLOS BIOLOGY, 2014, 12 (01)
[6]   Newly characterized Golgi- localized family of proteins is involved in calcium and pH homeostasis in yeast and human cells [J].
Demaegd, Didier ;
Foulquier, Francois ;
Colinet, Anne-Sophie ;
Gremillon, Louis ;
Legrand, Dominique ;
Mariot, Pascal ;
Peiter, Edgar ;
Van Schaftingen, Emile ;
Matthijs, Gert ;
Morsomme, Pierre .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (17) :6859-6864
[7]   The coiled-coil membrane protein golgin-84 is a novel rab effector required for Golgi ribbon formation [J].
Diao, A ;
Rahman, D ;
Pappin, DJC ;
Lucocq, J ;
Lowe, M .
JOURNAL OF CELL BIOLOGY, 2003, 160 (02) :201-212
[8]   OST4 is a subunit of the mammalian oligosaccharyltransferase required for efficient N-glycosylation [J].
Dumax-Vorzet, Audrey ;
Roboti, Peristera ;
High, Stephen .
JOURNAL OF CELL SCIENCE, 2013, 126 (12) :2595-2606
[9]   Functional profiling of the Saccharomyces cerevisiae genome [J].
Giaever, G ;
Chu, AM ;
Ni, L ;
Connelly, C ;
Riles, L ;
Véronneau, S ;
Dow, S ;
Lucau-Danila, A ;
Anderson, K ;
André, B ;
Arkin, AP ;
Astromoff, A ;
El Bakkoury, M ;
Bangham, R ;
Benito, R ;
Brachat, S ;
Campanaro, S ;
Curtiss, M ;
Davis, K ;
Deutschbauer, A ;
Entian, KD ;
Flaherty, P ;
Foury, F ;
Garfinkel, DJ ;
Gerstein, M ;
Gotte, D ;
Güldener, U ;
Hegemann, JH ;
Hempel, S ;
Herman, Z ;
Jaramillo, DF ;
Kelly, DE ;
Kelly, SL ;
Kötter, P ;
LaBonte, D ;
Lamb, DC ;
Lan, N ;
Liang, H ;
Liao, H ;
Liu, L ;
Luo, CY ;
Lussier, M ;
Mao, R ;
Menard, P ;
Ooi, SL ;
Revuelta, JL ;
Roberts, CJ ;
Rose, M ;
Ross-Macdonald, P ;
Scherens, B .
NATURE, 2002, 418 (6896) :387-391
[10]   Coordination of Golgi functions by phosphatidylinositol 4-kinases [J].
Graham, Todd R. ;
Burd, Christopher G. .
TRENDS IN CELL BIOLOGY, 2011, 21 (02) :113-121