Imaging Transcription in Living Cells

被引:90
作者
Darzacq, Xavier [1 ,2 ]
Yao, Jie [1 ,3 ]
Larson, Daniel R. [1 ,4 ]
Causse, Sebastien Z. [1 ,2 ]
Bosanac, Lana [1 ,2 ]
de Turris, Valeria [1 ,4 ]
Ruda, Vera M. [1 ,2 ]
Lionnet, Timothee [1 ,4 ]
Zenklusen, Daniel [1 ,4 ]
Guglielmi, Benjamin [1 ,3 ]
Tjian, Robert [1 ,3 ]
Singer, Robert H. [1 ,4 ]
机构
[1] Howard Hughes Med Inst, Janelia Farm Res Consortium Imaging Transcript, Ashburn, VA 20147 USA
[2] Ecole Normale Super, CNRS, UMR 8541, F-75230 Paris 5, France
[3] Univ Calif Berkeley, Howard Hughes Med Inst, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
[4] Yeshiva Univ, Albert Einstein Coll Med, Dept Anat & Struct Biol, Gruss Lipper Biophoton Ctr, Bronx, NY 10461 USA
关键词
modeling; RNA synthesis in live cells; polymerase kinetics; RNA-POLYMERASE-II; LIGAND-SPECIFIC DYNAMICS; MESSENGER-RNA; GLUCOCORTICOID-RECEPTOR; GENE-EXPRESSION; REAL-TIME; FLUORESCENCE RECOVERY; NUCLEAR PERIPHERY; P-TEFB; PHOTOBLEACHING FRAP;
D O I
10.1146/annurev.biophys.050708.133728
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The advent of new technologies for the imaging of living cells has made it possible to determine the properties of transcription the kinetics of, polymerase movement, the association of transcription factors, and the progression of the polymerase on the gene. We report here the current state of the field and the progress necessary to achieve a more complete understanding of the various steps in transcription. Our Consortium is dedicated to developing and implementing the technology to further this understanding.
引用
收藏
页码:173 / 196
页数:24
相关论文
共 99 条
[61]   P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo [J].
Ni, Zhuoyu ;
Saunders, Abbie ;
Fuda, Nicholas J. ;
Yao, Jie ;
Suarez, Jose-Ramon ;
Webb, Watt W. ;
Lis, John T. .
MOLECULAR AND CELLULAR BIOLOGY, 2008, 28 (03) :1161-1170
[62]   Tandemly arrayed genes in vertebrate genomes [J].
Pan, Deng ;
Zhang, Liqing .
COMPARATIVE AND FUNCTIONAL GENOMICS, 2008,
[63]   Controlling nuclear receptors: The circular logic of cofactor cycles [J].
Perissi, V ;
Rosenfeld, MG .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2005, 6 (07) :542-554
[64]   Kinetic modelling approaches to in vivo imaging [J].
Phair, RD ;
Misteli, T .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2001, 2 (12) :898-907
[65]   High mobility of proteins in the mammalian cell nucleus [J].
Phair, RD ;
Misteli, T .
NATURE, 2000, 404 (6778) :604-+
[66]   The localization of sites containing nascent RNA and splicing factors [J].
Pombo, A ;
Cook, PR .
EXPERIMENTAL CELL RESEARCH, 1996, 229 (02) :201-203
[67]   Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III [J].
Pombo, A ;
Jackson, DA ;
Hollinshead, M ;
Wang, ZX ;
Roeder, RG ;
Cook, PR .
EMBO JOURNAL, 1999, 18 (08) :2241-2253
[68]   Show and tell: visualizing gene expression in living cells [J].
Rafalska-Metcalf, Ilona U. ;
Janicki, Susan M. .
JOURNAL OF CELL SCIENCE, 2007, 120 (14) :2301-2307
[69]   Ligand-specific dynamics of the progesterone receptor in living cells and during chromatin remodeling in vitro [J].
Rayasam, GV ;
Elbi, C ;
Walker, DA ;
Wolford, R ;
Fletcher, TM ;
Edwards, DP ;
Hager, GL .
MOLECULAR AND CELLULAR BIOLOGY, 2005, 25 (06) :2406-2418
[70]   Transcriptional repression mediated by repositioning of genes to the nuclear lamina [J].
Reddy, K. L. ;
Zullo, J. M. ;
Bertolino, E. ;
Singh, H. .
NATURE, 2008, 452 (7184) :243-247