Reordering contigs of draft genomes using the Mauve Aligner

被引：419

作者：

Rissman, Anna I. ^{[1
]}

Mau, Bob ^{[1
]}

Biehl, Bryan S. ^{[1
]}

Darling, Aaron E. ^{[2
]}

Glasner, Jeremy D. ^{[1
]}

Perna, Nicole T. ^{[1
]}

机构：

[1] Univ Wisconsin, Genome Evolut Lab, Madison, WI 53706 USA

[2] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

来源：

BIOINFORMATICS | 2009年 / 25卷 / 16期

基金：

美国国家科学基金会; 美国国家卫生研究院;

关键词：

YERSINIA-PESTIS; COLI O157-H7; SEQUENCE; ASSEMBLIES; RESOURCE; K-12;

D O I：

10.1093/bioinformatics/btp356

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerful drill-down display allowing detailed exploration of results.

引用

页码：2071 / 2073

页数：3

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