What have we learned from the studies of two-state folders, and what are the unanswered questions about two-state protein folding?

被引:40
作者
Barrick, Doug [1 ]
机构
[1] Johns Hopkins Univ, TC Dept Biophys, Baltimore, MD 21218 USA
关键词
TRANSITION-STATE ENSEMBLE; SINGLE-DOMAIN PROTEINS; NOTCH ANKYRIN DOMAIN; TOPOMER SEARCH MODEL; RICH REPEAT DOMAIN; ENERGY LANDSCAPE; CONTACT ORDER; RATE PREDICTION; CHYMOTRYPSIN INHIBITOR-2; NUCLEATION-CONDENSATION;
D O I
10.1088/1478-3975/6/1/015001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Small proteins with globular structures often fold by simple all-or-none mechanisms, both in an equilibrium and a kinetic sense, despite the very large number of partly folded conformations available. This type of 'two-state' folding will be discussed in terms of experimental tests, underlying molecular mechanisms, and limits to two-state behavior. Factors that appear to be important for two-state folding include topology (sequence distance of contacts in the native structure), molecular cooperativity and local energy distribution. Because their local stability distributions and cooperativities can be dissected and analyzed separately from topological features, recent studies of the folding of symmetric proteins will be discussed as a means to better understand the origins of two-state folding.
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页数:9
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