Ab initio study of the ionization of the DNA bases:: Ionization potentials and excited states of the cations

被引:63
作者
Cauet, Emilie
Dehareng, Dominique
Lievin, Jacques
机构
[1] Free Univ Brussels, Serv Chim Quant & Photophys, B-1050 Brussels, Belgium
[2] Univ Liege, Ctr Ingn Prot, B-4000 Liege 1, Belgium
关键词
D O I
10.1021/jp0617625
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The ionization of the four DNA bases is investigated by means of ab initio calculations. Accurate values of the gas-phase vertical and adiabatic ionization potentials (IP) are obtained at the MP2/6-31G(2d(0.8, alpha(d)), p) level of theory. The need of introducing extra polarization to the standard 6-31G(d, p) basis set is demonstrated by test calculations and an optimal value of alpha(d) = 0.1 is obtained. Ionization to electronically excited radical cations is also considered. The low-lying excited states of the cations are characterized for the first time. The topology of the corresponding potential energy surfaces is qualitatively described in terms of the stationary points ( minima and saddle points) located on these surfaces. A conical intersection is characterized for the first time on the ground-state potential energy surface of all cations. It arises from the crossing of the adiabatic surfaces of the ground and first excited state at planar geometries. A nonplanar minimum is observed for the cytosine cation only. The geometry and electronic changes occurring along these surfaces are analyzed, leading to a comparison between the different nucleobase cations. The study of larger ionized systems related to DNA is rendered possible thanks to the optimized medium size basis set proposed in this work, as exemplified by the calculation of the IP of a stacked dimer of guanines.
引用
收藏
页码:9200 / 9211
页数:12
相关论文
共 68 条
[51]   Cation-π/H-bond stair motifs at protein-DNA interfaces [J].
Rooman, M ;
Liévin, J ;
Buisine, E ;
Wintjens, R .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 319 (01) :67-76
[52]   Efficient deactivation of a model base pair via excited-state hydrogen transfer [J].
Schultz, T ;
Samoylova, E ;
Radloff, W ;
Hertel, IV ;
Sobolewski, AL ;
Domcke, W .
SCIENCE, 2004, 306 (5702) :1765-1768
[53]   Influence of the sequence dependent ionization potentials of guanines on the luminescence quenching of Ru-labeled oligonucleotides:: A theoretical and experimental study [J].
Schumm, S ;
Prévost, M ;
García-Fresnadillo, D ;
Lentzen, O ;
Moucheron, C ;
Kirsch-De Mesmaeker, A .
JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (10) :2763-2768
[54]   Long-range charge transfer in DNA: Transient structural distortions control the distance dependence [J].
Schuster, GB .
ACCOUNTS OF CHEMICAL RESEARCH, 2000, 33 (04) :253-260
[55]   SELF-CONSISTENT MOLECULAR-ORBITAL METHODS .18. CONSTRAINTS AND STABILITY IN HARTREE-FOCK THEORY [J].
SEEGER, R ;
POPLE, JA .
JOURNAL OF CHEMICAL PHYSICS, 1977, 66 (07) :3045-3050
[56]   AB-INITIO MOLECULAR-ORBITAL CALCULATIONS OF DNA RADICAL IONS .5. SCALING OF CALCULATED ELECTRON-AFFINITIES AND IONIZATION-POTENTIALS TO EXPERIMENTAL VALUES [J].
SEVILLA, MD ;
BESLER, B ;
COLSON, AO .
JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (03) :1060-1063
[57]   A NEW DIRECT CI METHOD FOR LARGE CI EXPANSIONS IN A SMALL ORBITAL SPACE [J].
SIEGBAHN, PEM .
CHEMICAL PHYSICS LETTERS, 1984, 109 (05) :417-423
[58]   On the mechanism of nonradiative decay of DNA bases: ab initio and TDDFT results for the excited states of 9H-adenine [J].
Sobolewski, AL ;
Domcke, W .
EUROPEAN PHYSICAL JOURNAL D, 2002, 20 (03) :369-374
[59]   NONPLANAR GEOMETRIES OF DNA BASES - AB-INITIO 2ND-ORDER MOLLER-PLESSET STUDY [J].
SPONER, J ;
HOBZA, P .
JOURNAL OF PHYSICAL CHEMISTRY, 1994, 98 (12) :3161-3164
[60]   Theoretical studies of GC-specific photocleavage of DNA via electron transfer: Significant lowering of ionization potential and 5'-localization of HOMO of stacked GG bases in B-form DNA [J].
Sugiyama, H ;
Saito, I .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (30) :7063-7068