The structural basis for regulated assembly and function of the transcriptional activator NtrC

被引:102
作者
De Carlo, Sacha
Chen, Baoyu
Hoover, Timothy R.
Kondrashkina, Elena
Nogales, Eva
Nixon, B. Tracy [1 ]
机构
[1] Univ Calif Berkeley, Howard Hughes Med Inst, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
[2] Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA
[3] Penn State Univ, Integrat Biosci Grad Degree Program Chem Biol, University Pk, PA 16802 USA
[4] Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA
[5] Univ Georgia, Dept Microbiol, Athens, GA 30602 USA
[6] IIT, BioCAT, APS, Argonne Natl Lab, Argonne, IL 60439 USA
关键词
NtrC; gene regulation; AAA plus ATPase assembly; transcription activation; enhancer-binding protein; two-component signal transduction;
D O I
10.1101/gad.1418306
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
In two-component signal transduction, an input triggers phosphorylation of receiver domains that regulate the status of output modules. One such module is the AAA+ ATPase domain in bacterial enhancer-binding proteins that remodel the sigma(54) form of RNA polymerase. We report X-ray solution scattering and electron microscopy structures of the activated, full-length nitrogen-regulatory protein C (NtrC) showing a novel mechanism for regulation of AAA+ ATPase assembly via the juxtaposition of the receiver domains and ATPase ring. Accompanying the hydrolysis cycle that is required for transcriptional activation, we observed major order-disorder changes in the GAFTGA loops involved in sigma(54) binding, as well as in the DNA-binding domains.
引用
收藏
页码:1485 / 1495
页数:11
相关论文
共 57 条
[1]  
Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkr1065, 10.1093/nar/gkh121]
[2]   Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action [J].
Chaney, M ;
Grande, R ;
Wigneshweraraj, SR ;
Cannon, W ;
Casaz, P ;
Gallegos, MT ;
Schumacher, J ;
Jones, S ;
Elderkin, S ;
Dago, AE ;
Morett, E ;
Buck, M .
GENES & DEVELOPMENT, 2001, 15 (17) :2282-2294
[3]  
Demeler B, 2005, ANALYTICAL ULTRACENTRIFUGATION: TECHNIQUES AND METHODS, P210
[4]   SUBSTITUTIONS AT A SINGLE AMINO-ACID RESIDUE IN THE NITROGEN-REGULATED ACTIVATOR PROTEIN NTRC DIFFERENTIALLY INFLUENCE ITS ACTIVITY IN RESPONSE TO PHOSPHORYLATION [J].
DIXON, R ;
EYDMANN, T ;
HENDERSON, N ;
AUSTIN, S .
MOLECULAR MICROBIOLOGY, 1991, 5 (07) :1657-1667
[5]   Negative regulation of AAA+ ATPase assembly by two component receiver domains: A transcription activation mechanism that is conserved in mesophilic and extremely hyperthermophilic bacteria [J].
Doucleff, M ;
Chen, BY ;
Maris, AE ;
Wemmer, DE ;
Kondrashkina, E ;
Nixon, BT .
JOURNAL OF MOLECULAR BIOLOGY, 2005, 353 (02) :242-255
[6]   THE FUNCTION OF ISOLATED DOMAINS AND CHIMAERIC PROTEINS CONSTRUCTED FROM THE TRANSCRIPTIONAL ACTIVATORS NIFA AND NTRC OF KLEBSIELLA-PNEUMONIAE [J].
DRUMMOND, MH ;
CONTRERAS, A ;
MITCHENALL, LA .
MOLECULAR MICROBIOLOGY, 1990, 4 (01) :29-37
[7]   The BioCAT undulator beamline 18ID: a facility for biological non-crystalline diffraction and X-ray absorption spectroscopy at the Advanced Photon Source [J].
Fischetti, R ;
Stepanov, S ;
Rosenbaum, G ;
Barrea, R ;
Black, E ;
Gore, D ;
Heurich, R ;
Kondrashkina, E ;
Kropf, AJ ;
Wang, S ;
Zhang, K ;
Irving, TC ;
Bunker, GB .
JOURNAL OF SYNCHROTRON RADIATION, 2004, 11 :399-405
[8]   High-resolution wide-angle X-ray scattering of protein solutions: effect of beam dose on protein integrity [J].
Fischetti, RF ;
Rodi, DJ ;
Mirza, A ;
Irving, TC ;
Kondrashkina, E ;
Makowski, L .
JOURNAL OF SYNCHROTRON RADIATION, 2003, 10 :398-404
[9]   SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields [J].
Frank, J ;
Radermacher, M ;
Penczek, P ;
Zhu, J ;
Li, YH ;
Ladjadj, M ;
Leith, A .
JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) :190-199
[10]   SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling [J].
Guex, N ;
Peitsch, MC .
ELECTROPHORESIS, 1997, 18 (15) :2714-2723