Predicting structures for genome proteins

被引:43
作者
Fischer, D [1 ]
Eisenberg, D
机构
[1] Fac Nat Sci, Dept Math & Comp Sci, IL-84015 Beer Sheva, Israel
[2] Univ Calif Los Angeles, DOE, Lab Struct Biol & Mol Med, Inst Mol Biol, Los Angeles, CA 90095 USA
关键词
D O I
10.1016/S0959-440X(99)80029-3
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Assigning three-dimensional protein folds to genome sequences is essential to understanding protein function. Although experimental three-dimensional structures are currently available for only a very small fraction of these sequences, computational fold assignment is able to assign folds to 20-30% of the sequences in various genomes. This percentage varies depending on the particular organism under analysis, on the sensitivities of the methods used and on the number of experimental structures available at the time the assignment is carried out. The fraction of assignable sequences is currently increasing at an annual rate of roughly 18%. If this rate is sustained throughout the coming years, three-dimensional computational models for more than half of the genome sequences may be available by the year 2003.
引用
收藏
页码:208 / 211
页数:4
相关论文
共 19 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[3]  
Bork P, 1996, METHOD ENZYMOL, V266, P162
[4]  
CASARI G, 1996, 1 ANN PAC S BIOC WOR, P707
[5]   PROTEINS - 1000 FAMILIES FOR THE MOLECULAR BIOLOGIST [J].
CHOTHIA, C .
NATURE, 1992, 357 (6379) :543-544
[6]  
Dubchak I, 1998, Microb Comp Genomics, V3, P171, DOI 10.1089/omi.1.1998.3.171
[7]   Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium [J].
Fischer, D ;
Eisenberg, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (22) :11929-11934
[8]   Assigning amino acid sequences to 3-dimensional protein folds [J].
Fischer, D ;
Rice, D ;
Bowie, JU ;
Eisenberg, D .
FASEB JOURNAL, 1996, 10 (01) :126-136
[9]  
FISCHER D, 1996, 1 ANN PAC S BIOC 199, P300
[10]   THE MINIMAL GENE COMPLEMENT OF MYCOPLASMA-GENITALIUM [J].
FRASER, CM ;
GOCAYNE, JD ;
WHITE, O ;
ADAMS, MD ;
CLAYTON, RA ;
FLEISCHMANN, RD ;
BULT, CJ ;
KERLAVAGE, AR ;
SUTTON, G ;
KELLEY, JM ;
FRITCHMAN, JL ;
WEIDMAN, JF ;
SMALL, KV ;
SANDUSKY, M ;
FUHRMANN, J ;
NGUYEN, D ;
UTTERBACK, TR ;
SAUDEK, DM ;
PHILLIPS, CA ;
MERRICK, JM ;
TOMB, JF ;
DOUGHERTY, BA ;
BOTT, KF ;
HU, PC ;
LUCIER, TS ;
PETERSON, SN ;
SMITH, HO ;
HUTCHISON, CA ;
VENTER, JC .
SCIENCE, 1995, 270 (5235) :397-403