Functional interactions among microRNAs and long noncoding RNAs

被引:554
作者
Yoon, Je-Hyun [1 ]
Abdelmohsen, Kotb [1 ]
Gorospe, Myriam [1 ]
机构
[1] NIA, Genet Lab, Intramural Res Program, NIH, Baltimore, MD 21224 USA
基金
美国国家卫生研究院;
关键词
Post-transcriptional gene regulation; Ribonucleoprotein complex; RNA-binding protein; mRNA stability; Translation; EMBRYONIC STEM-CELLS; REPRESSIVE COMPLEX 2; TUMOR-SUPPRESSOR; MESSENGER-RNAS; CIRCULAR RNAS; HUMAN GENOME; MUSCLE DIFFERENTIATION; ANTISENSE RNA; GENE; TRANSLATION;
D O I
10.1016/j.semcdb.2014.05.015
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
In mammals, the vast majority of transcripts expressed are noncoding RNAs, ranging from short RNAs (including microRNAs) to long RNAs spanning up to hundreds of kb. While the actions of microRNAs as destabilizers and repressors of the translation of protein-coding transcripts (mRNAs) have been studied in detail, the influence of microRNAs on long noncoding RNA (lncRNA) function is only now coming into view. Conversely, the influence of lncRNAs upon microRNA function is also rapidly emerging. In some cases, lncRNA stability is reduced through the interaction of specific miRNAs. In other cases, lncRNAs can act as microRNA decoys, with the sequestration of microRNAs favoring expression of repressed target mRNAs. Other lncRNAs derepress gene expression by competing with miRNAs for interaction with shared target mRNAs. Finally, some lncRNAs can produce miRNAs, leading to repression of target mRNAs. These microRNA-lncRNA regulatory paradigms modulate gene expression patterns that drive major cellular processes (such as cell differentiation, proliferation, and cell death) which are central to mammalian physiologic and pathologic processes. We review and summarize the types of microRNA-lncRNA crosstalk identified to-date and discuss their influence on gene expression programs. Published by Elsevier Ltd.
引用
收藏
页码:9 / 14
页数:6
相关论文
共 72 条
[1]   High-resolution profiling of histone methylations in the human genome [J].
Barski, Artern ;
Cuddapah, Suresh ;
Cui, Kairong ;
Roh, Tae-Young ;
Schones, Dustin E. ;
Wang, Zhibin ;
Wei, Gang ;
Chepelev, Iouri ;
Zhao, Keji .
CELL, 2007, 129 (04) :823-837
[2]   MicroRNAs: Target Recognition and Regulatory Functions [J].
Bartel, David P. .
CELL, 2009, 136 (02) :215-233
[3]   Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [J].
Birney, Ewan ;
Stamatoyannopoulos, John A. ;
Dutta, Anindya ;
Guigo, Roderic ;
Gingeras, Thomas R. ;
Margulies, Elliott H. ;
Weng, Zhiping ;
Snyder, Michael ;
Dermitzakis, Emmanouil T. ;
Stamatoyannopoulos, John A. ;
Thurman, Robert E. ;
Kuehn, Michael S. ;
Taylor, Christopher M. ;
Neph, Shane ;
Koch, Christoph M. ;
Asthana, Saurabh ;
Malhotra, Ankit ;
Adzhubei, Ivan ;
Greenbaum, Jason A. ;
Andrews, Robert M. ;
Flicek, Paul ;
Boyle, Patrick J. ;
Cao, Hua ;
Carter, Nigel P. ;
Clelland, Gayle K. ;
Davis, Sean ;
Day, Nathan ;
Dhami, Pawandeep ;
Dillon, Shane C. ;
Dorschner, Michael O. ;
Fiegler, Heike ;
Giresi, Paul G. ;
Goldy, Jeff ;
Hawrylycz, Michael ;
Haydock, Andrew ;
Humbert, Richard ;
James, Keith D. ;
Johnson, Brett E. ;
Johnson, Ericka M. ;
Frum, Tristan T. ;
Rosenzweig, Elizabeth R. ;
Karnani, Neerja ;
Lee, Kirsten ;
Lefebvre, Gregory C. ;
Navas, Patrick A. ;
Neri, Fidencio ;
Parker, Stephen C. J. ;
Sabo, Peter J. ;
Sandstrom, Richard ;
Shafer, Anthony .
NATURE, 2007, 447 (7146) :799-816
[4]   CIRCULAR TRANSCRIPTS OF THE TESTIS-DETERMINING GENE SRY IN ADULT-MOUSE TESTIS [J].
CAPEL, B ;
SWAIN, A ;
NICOLIS, S ;
HACKER, A ;
WALTER, M ;
KOOPMAN, P ;
GOODFELLOW, P ;
LOVELLBADGE, R .
CELL, 1993, 73 (05) :1019-1030
[5]   The transcriptional landscape of the mammalian genome [J].
Carninci, P ;
Kasukawa, T ;
Katayama, S ;
Gough, J ;
Frith, MC ;
Maeda, N ;
Oyama, R ;
Ravasi, T ;
Lenhard, B ;
Wells, C ;
Kodzius, R ;
Shimokawa, K ;
Bajic, VB ;
Brenner, SE ;
Batalov, S ;
Forrest, ARR ;
Zavolan, M ;
Davis, MJ ;
Wilming, LG ;
Aidinis, V ;
Allen, JE ;
Ambesi-Impiombato, X ;
Apweiler, R ;
Aturaliya, RN ;
Bailey, TL ;
Bansal, M ;
Baxter, L ;
Beisel, KW ;
Bersano, T ;
Bono, H ;
Chalk, AM ;
Chiu, KP ;
Choudhary, V ;
Christoffels, A ;
Clutterbuck, DR ;
Crowe, ML ;
Dalla, E ;
Dalrymple, BP ;
de Bono, B ;
Della Gatta, G ;
di Bernardo, D ;
Down, T ;
Engstrom, P ;
Fagiolini, M ;
Faulkner, G ;
Fletcher, CF ;
Fukushima, T ;
Furuno, M ;
Futaki, S ;
Gariboldi, M .
SCIENCE, 2005, 309 (5740) :1559-1563
[6]   Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat [J].
Carrieri, Claudia ;
Cimatti, Laura ;
Biagioli, Marta ;
Beugnet, Anne ;
Zucchelli, Silvia ;
Fedele, Stefania ;
Pesce, Elisa ;
Ferrer, Isidre ;
Collavin, Licio ;
Santoro, Claudio ;
Forrest, Alistair R. R. ;
Carninci, Piero ;
Biffo, Stefano ;
Stupka, Elia ;
Gustincich, Stefano .
NATURE, 2012, 491 (7424) :454-+
[7]   A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA [J].
Cesana, Marcella ;
Cacchiarelli, Davide ;
Legnini, Ivano ;
Santini, Tiziana ;
Sthandier, Olga ;
Chinappi, Mauro ;
Tramontano, Anna ;
Bozzoni, Irene .
CELL, 2011, 147 (02) :358-369
[8]   Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution [J].
Cheng, J ;
Kapranov, P ;
Drenkow, J ;
Dike, S ;
Brubaker, S ;
Patel, S ;
Long, J ;
Stern, D ;
Tammana, H ;
Helt, G ;
Sementchenko, V ;
Piccolboni, A ;
Bekiranov, S ;
Bailey, DK ;
Ganesh, M ;
Ghosh, S ;
Bell, I ;
Gerhard, DS ;
Gingeras, TR .
SCIENCE, 2005, 308 (5725) :1149-1154
[9]   Genistein Inhibits Prostate Cancer Cell Growth by Targeting miR-34a and Oncogenic HOTAIR [J].
Chiyomaru, Takeshi ;
Yamamura, Soichiro ;
Fukuhara, Shinichiro ;
Yoshino, Hirofumi ;
Kinoshita, Takashi ;
Majid, Shahana ;
Saini, Sharanjot ;
Chang, Inik ;
Tanaka, Yuichiro ;
Enokida, Hideki ;
Seki, Naohiko ;
Nakagawa, Masayuki ;
Dahiya, Rajvir .
PLOS ONE, 2013, 8 (08)
[10]   Promiscuous RNA binding by Polycomb repressive complex 2 [J].
Davidovich, Chen ;
Zheng, Leon ;
Goodrich, Karen J. ;
Cech, Thomas R. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2013, 20 (11) :1250-U273