Covalent reaction intermediate revealed in crystal structure of the Geobacillus stearothermophilus carboxylesterase Est30

被引:54
作者
Liu, P
Wang, YF
Ewis, HE
Abdelal, AT
Lu, CD
Harrison, RW
Weber, IT [1 ]
机构
[1] Georgia State Univ, Dept Biol Mol Basis Dis Program, Atlanta, GA 30303 USA
[2] Northeastern Univ, Provost Off, Boston, MA 02115 USA
[3] Georgia State Univ, Mol Basis Dis Program, Atlanta, GA 30303 USA
基金
美国国家科学基金会;
关键词
D O I
10.1016/j.jmb.2004.06.069
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Est30 is a thermophilic carboxylesterase cloned from Geobacillus stearothermophilus that showed optimal hydrolysis of esters with short acyl chains at 70 degreesC. Est30 is a member of a new family of carboxylesterases with representatives in other Gram-positive bacteria. The crystal structure has been determined at 1.63 Angstrom resolution using multiple anomalous dispersion data. The two-domain crystal structure showed a large domain with a modified alpha/beta hydrolase core including a seven, rather than an eight-stranded beta sheet, and a smaller cap domain comprising three alpha helices. The catalytic triad consists of residues Ser94, Asp193, and His223. A 100 Da tetrahedral ligand was observed to be covalently bound to the side-chain of Ser94. The propyl acetate ligand represents the first tetrahedral intermediate in the reaction mechanism. Therefore, this Est30 crystal structure will help understand the mode of action of all enzymes in the serine hydrolase superfamily. (C) 2004 Elsevier Ltd. All rights reserved.
引用
收藏
页码:551 / 561
页数:11
相关论文
共 38 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   Bacterial lipolytic enzymes: classification and properties [J].
Arpigny, JL ;
Jaeger, KE .
BIOCHEMICAL JOURNAL, 1999, 343 :177-183
[3]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[4]  
BORNEMANN S, 1992, BIOCATALYSIS, V7, P1
[5]   Methods to increase enantioselectivity of lipases and esterases [J].
Bornscheuer, UT .
CURRENT OPINION IN BIOTECHNOLOGY, 2002, 13 (06) :543-547
[6]   THE MOLECULAR EVOLUTION OF GENES AND PROTEINS - A TALE OF 2 SERINES [J].
BRENNER, S .
NATURE, 1988, 334 (6182) :528-530
[7]  
Brunger AT, 1998, ACTA CRYSTALLOGR D, V54, P905, DOI 10.1107/s0907444998003254
[8]   ALIGN: a program to superimpose protein coordinates, accounting for insertions and deletions [J].
Cohen, GH .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1997, 30 :1160-1161
[9]   A snapshot of a transition state analogue of a novel thermophilic esterase belonging to the subfamily of mammalian hormone-sensitive lipase [J].
De Simone, G ;
Galdiero, S ;
Manco, G ;
Lang, D ;
Rossi, M ;
Pedone, C .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 303 (05) :761-771
[10]   The crystal structure of a hyper-thermophilic carboxylesterase from the archaeon Archaeoglobus fulgidus [J].
De Simone, G ;
Menchise, V ;
Manco, G ;
Mandrich, L ;
Sorrentino, N ;
Lang, D ;
Rossi, M ;
Pedone, C .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 314 (03) :507-518