Exome Sequencing in the Clinical Diagnosis of Sporadic or Familial Cerebellar Ataxia

被引:186
作者
Fogel, Brent L. [1 ]
Lee, Hane [2 ,3 ,4 ]
Deignan, Joshua L. [2 ,3 ,4 ]
Strom, Samuel P. [2 ,3 ,4 ]
Kantarci, Sibel [2 ,3 ,4 ]
Wang, Xizhe [1 ]
Quintero-Rivera, Fabiola [2 ,3 ,4 ]
Vilain, Eric [4 ,5 ,6 ]
Grody, Wayne W. [2 ,3 ,4 ,5 ,6 ]
Perlman, Susan [1 ]
Geschwind, Daniel H. [1 ,5 ]
Nelson, Stanley F. [1 ,2 ,3 ,4 ,5 ]
机构
[1] Univ Calif Los Angeles, David Geffen Sch Med, Dept Neurol, Program Neurogenet, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, David Geffen Sch Med, Dept Pathol, Los Angeles, CA 90095 USA
[3] Univ Calif Los Angeles, David Geffen Sch Med, Lab Med, Los Angeles, CA 90095 USA
[4] Univ Calif Los Angeles, David Geffen Sch Med, UCLA Clin Genom Ctr, Los Angeles, CA 90095 USA
[5] Univ Calif Los Angeles, David Geffen Sch Med, Dept Human Genet, Los Angeles, CA 90095 USA
[6] Univ Calif Los Angeles, David Geffen Sch Med, Dept Pediat, Los Angeles, CA 90095 USA
基金
美国国家卫生研究院;
关键词
MUTATIONS; FEATURES; UTILITY; TOOL;
D O I
10.1001/jamaneurol.2014.1944
中图分类号
R74 [神经病学与精神病学];
学科分类号
100204 [神经病学];
摘要
IMPORTANCE Cerebellar ataxias are a diverse collection of neurologic disorders with causes ranging from common acquired etiologies to rare genetic conditions. Numerous genetic disorders have been associated with chronic progressive ataxia and this consequently presents a diagnostic challenge for the clinician regarding how to approach and prioritize genetic testing in patients with such clinically heterogeneous phenotypes. Additionally, while the value of genetic testing in early-onset and/or familial cases seems clear, many patients with ataxia present sporadically with adult onset of symptoms and the contribution of genetic variation to the phenotype of these patients has not yet been established. OBJECTIVE To investigate the contribution of genetic disease in a population of patients with predominantly adult- and sporadic-onset cerebellar ataxia. DESIGN, SETTING, AND PARTICIPANTS We examined a consecutive series of 76 patients presenting to a tertiary referral center for evaluation of chronic progressive cerebellar ataxia. MAIN OUTCOMES AND MEASURES Next-generation exome sequencing coupled with comprehensive bioinformatic analysis, phenotypic analysis, and clinical correlation. RESULTS We identified clinically relevant genetic information in more than 60% of patients studied (n = 46), including diagnostic pathogenic gene variants in 21% (n = 16), a notable yield given the diverse genetics and clinical heterogeneity of the cerebellar ataxias. CONCLUSIONS AND RELEVANCE This study demonstrated that clinical exome sequencing in patients with adult-onset and sporadic presentations of ataxia is a high-yield test, providing a definitive diagnosis in more than one-fifth of patients and suggesting a potential diagnosis in more than one-third to guide additional phenotyping and diagnostic evaluation. Therefore, clinical exome sequencing is an appropriate consideration in the routine genetic evaluation of all patients presenting with chronic progressive cerebellar ataxia.
引用
收藏
页码:1237 / 1246
页数:10
相关论文
共 34 条
[1]
A method and server for predicting damaging missense mutations [J].
Adzhubei, Ivan A. ;
Schmidt, Steffen ;
Peshkin, Leonid ;
Ramensky, Vasily E. ;
Gerasimova, Anna ;
Bork, Peer ;
Kondrashov, Alexey S. ;
Sunyaev, Shamil R. .
NATURE METHODS, 2010, 7 (04) :248-249
[2]
An integrated map of genetic variation from 1,092 human genomes [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Schmidt, Jeanette P. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Dinh, Huyen ;
Kovar, Christie ;
Lee, Sandra ;
Lewis, Lora ;
Muzny, Donna ;
Reid, Jeff ;
Wang, Min ;
Wang, Jun ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Li, Zhuo ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Su, Zhe ;
Tai, Shuaishuai ;
Tang, Meifang .
NATURE, 2012, 491 (7422) :56-65
[3]
Exome sequencing as a tool for Mendelian disease gene discovery [J].
Bamshad, Michael J. ;
Ng, Sarah B. ;
Bigham, Abigail W. ;
Tabor, Holly K. ;
Emond, Mary J. ;
Nickerson, Deborah A. ;
Shendure, Jay .
NATURE REVIEWS GENETICS, 2011, 12 (11) :745-755
[4]
Bernard G, 2012, GeneReviews.
[5]
Neurologic Features and Genotype-Phenotype Correlation in Wolfram Syndrome [J].
Chaussenot, Annabelle ;
Bannwarth, Sylvie ;
Rouzier, Cecile ;
Vialettes, Bernard ;
Ait El Mkadem, Samira ;
Chabrol, Brigitte ;
Cano, Aline ;
Labauge, Pierre ;
Paquis-Flucklinger, Veronique .
ANNALS OF NEUROLOGY, 2011, 69 (03) :501-508
[6]
Using next-generation sequencing as a genetic diagnostic tool in rare autosomal recessive neurologic Mendelian disorders [J].
Chen, Zhao ;
Wang, Jun-ling ;
Tang, Bei-sha ;
Sun, Zhan-fang ;
Shi, Yu-ting ;
Shen, Lu ;
Lei, Li-fang ;
Wei, Xiao-ming ;
Xiao, Jing-jing ;
Hu, Zheng-mao ;
Pan, Qian ;
Xia, Kun ;
Zhang, Qing-yan ;
Dai, Mei-zhi ;
Liu, Yu ;
Ashizawa, Tetsuo ;
Jiang, Hong .
NEUROBIOLOGY OF AGING, 2013, 34 (10) :2442.e11-2442.e17
[7]
Distribution and intensity of constraint in mammalian genomic sequence [J].
Cooper, GM ;
Stone, EA ;
Asimenos, G ;
Green, ED ;
Batzoglou, S ;
Sidow, A .
GENOME RESEARCH, 2005, 15 (07) :901-913
[8]
Genomic medicine enters the neurology clinic [J].
Coppola, Giovanni ;
Geschwind, Daniel H. .
NEUROLOGY, 2012, 79 (02) :112-114
[9]
Complex I deficiency: clinical features, biochemistry and molecular genetics [J].
Fassone, Elisa ;
Rahman, Shamima .
JOURNAL OF MEDICAL GENETICS, 2012, 49 (09) :578-590
[10]
Fogel B, 2011, UNCOMMON CAUSES MOVE, P198