Simulations of Membrane Tubulation by Lattices of Amphiphysin N-BAR Domains

被引:110
作者
Yin, Ying [1 ,2 ]
Arkhipov, Anton [1 ,2 ]
Schulten, Klaus [1 ,2 ]
机构
[1] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
[2] Univ Illinois, Beckman Inst, Urbana, IL 61801 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; STRUCTURAL BASIS; LIPID-BILAYERS; CURVATURE; PROTEINS; INVAGINATION; MECHANISM; FUSION; MODEL;
D O I
10.1016/j.str.2009.03.016
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Membrane compartments of manifold shapes are found in cells, often sculpted by cellular proteins. In particular, proteins of the BAR domain superfamily participate in membrane-sculpting processes in vivo and reshape also in vitro low-curvature membrane liposomes into high-curvature tubes and vesicles. Here we show by means of computer simulations totaling over 1 millisecond, how lattices involving parallel rows of amphiphysin N-BAR domains sculpt flat membranes into tubes. A highly detailed, dynamic picture of the 100-microsecond formation of membrane tubes by lattices of N-BAR domains is obtained. Lattice types inducing a wide range of membrane curvatures, with radii approximately 15-100 nm, are explored. The results suggest that multiple lattice types are viable for efficient membrane bending.
引用
收藏
页码:882 / 892
页数:11
相关论文
共 42 条
[1]  
[Anonymous], 1992, Neural computation and self-organizing maps
[2]   Four-scale description of membrane sculpting by BAR domains [J].
Arkhipov, Anton ;
Yin, Ying ;
Schulten, Klaus .
BIOPHYSICAL JOURNAL, 2008, 95 (06) :2806-2821
[3]   Stability and dynamics of virus capsids described by coarse-grained modeling [J].
Arkhipov, Anton ;
Freddolino, Peter L. ;
Schulten, Klaus .
STRUCTURE, 2006, 14 (12) :1767-1777
[4]   Coarse-grained molecular dynamics simulations of a rotating bacterial flagellum [J].
Arkhipov, Anton ;
Freddolino, Peter L. ;
Imada, Katsumi ;
Namba, Keiichi ;
Schulten, Klaus .
BIOPHYSICAL JOURNAL, 2006, 91 (12) :4589-4597
[5]   Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulations [J].
Blood, Philip D. ;
Swenson, Richard D. ;
Voth, Gregory A. .
BIOPHYSICAL JOURNAL, 2008, 95 (04) :1866-1876
[6]   Coarse-grained molecular dynamics simulations of membrane proteins and peptides [J].
Bond, Peter J. ;
Holyoake, John ;
Ivetac, Anthony ;
Khalid, Syma ;
Sansom, Mark S. P. .
JOURNAL OF STRUCTURAL BIOLOGY, 2007, 157 (03) :593-605
[7]   The hydrophobic insertion mechanism of membrane curvature generation by proteins [J].
Campelo, Felix ;
McMahon, Harvey T. ;
Kozlov, Michael M. .
BIOPHYSICAL JOURNAL, 2008, 95 (05) :2325-2339
[8]   Molecular dynamics simulations of lipid bilayers [J].
Feller, SE .
CURRENT OPINION IN COLLOID & INTERFACE SCIENCE, 2000, 5 (3-4) :217-223
[9]  
Freddolino Peter L., 2009, P299
[10]   Structural basis of membrane invagination by F-BAR domains [J].
Frost, Adam ;
Perera, Rushika ;
Roux, Aurelien ;
Spasov, Krasimir ;
Destaing, Olivier ;
Egelman, Edward H. ;
De Camilli, Pietro ;
Unger, Vinzenz M. .
CELL, 2008, 132 (05) :807-817