NF1 mRNA biogenesis:: Effect of the genomic milieu in splicing regulation of the NF1 exon 37 region

被引:56
作者
Baralle, Marco
Skoko, Natasa
Knezevich, Anna
De Conti, Laura
Motti, Dario
Bhuvanagiri, Madhuri
Baralle, Diana
Buratti, Emanuele
Baralle, Francisco E.
机构
[1] Int Ctr Genet Engn & Biotechnol, I-34012 Trieste, Italy
[2] Addenbrookes Hosp, Dept Med Genet, Cambridge CB2 2QQ, England
关键词
NF1; splicing; genomic context; exonic Splicing Enhancers;
D O I
10.1016/j.febslet.2006.07.018
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have studied the splicing regulation of NF1 exons 36 and 37. We show that they, not only require an intact exon Splicing Enhancer (ESE) within exon 37, but also need the genomic region stretching from exons 31 to 38. Any nucleotide change in two exon 37 third codon positions disrupts the ESE. The extent of exons 36 and 37 skipping due to a mutated ESE depends on the genomic context. This is a unique example of what may be a more general phenomena involved in the tuning of pre-mRNA processing and gene expression modulation in the chromosomal setting. (c) 2006 Federation of European Biochemical Societies. Published by Elsevier B.V.. All rights reserved.
引用
收藏
页码:4449 / 4456
页数:8
相关论文
共 30 条
  • [1] Mutations affecting mRNA splicing are the most common molecular defects in patients with neurofibromatosis type 1
    Ars, E
    Serra, E
    García, J
    Kruyer, H
    Gaona, A
    Lázaro, C
    Estivill, X
    [J]. HUMAN MOLECULAR GENETICS, 2000, 9 (02) : 237 - 247
  • [2] Identification of a mutation that perturbs NF1 gene splicing using genomic DNA samples and a minigene assay
    Baralle, M
    Baralle, D
    De Conti, L
    Mattocks, C
    Whittaker, J
    Knezevich, A
    Ffrench-Constant, C
    Baralle, FE
    [J]. JOURNAL OF MEDICAL GENETICS, 2003, 40 (03) : 220 - 222
  • [3] Alternative splicing induced by nonsense mutations in the immunoglobulin μ VDJ exon is independent of truncation of the open reading frame
    Bühler, M
    Mühlemann, O
    [J]. RNA, 2005, 11 (02) : 139 - 146
  • [4] Another step forward for SELEXive splicing
    Buratti, E
    Baralle, FE
    [J]. TRENDS IN MOLECULAR MEDICINE, 2005, 11 (01) : 5 - 9
  • [5] Predictive identification of exonic splicing enhancers in human genes
    Fairbrother, WG
    Yeh, RF
    Sharp, PA
    Burge, CB
    [J]. SCIENCE, 2002, 297 (5583) : 1007 - 1013
  • [6] A novel mutation in the neurofibromatosis type 1 (NF1) gene promotes skipping of two exons by preventing exon definition
    Fang, LJ
    Simard, MJ
    Vidaud, D
    Assouline, B
    Lemieux, B
    Vidaud, M
    Chabot, B
    Thirion, JP
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2001, 307 (05) : 1261 - 1270
  • [7] A polar mechanism coordinates different regions of alternative splicing within a single gene
    Fededa, JP
    Petrillo, E
    Gelfand, MS
    Neverov, AD
    Kadener, S
    Nogués, G
    Pelisch, F
    Baralle, FE
    Muro, AF
    Kornblihtt, AR
    [J]. MOLECULAR CELL, 2005, 19 (03) : 393 - 404
  • [8] Sorting out the complexity of SR protein functions
    Graveley, BR
    [J]. RNA, 2000, 6 (09) : 1197 - 1211
  • [9] Haire RN, 1997, AM J HUM GENET, V60, P798
  • [10] Nearby stop codons in exons of the neurofibromatosis type 1 gene are disparate splice effectors
    Hoffmeyer, S
    Nürnberg, P
    Ritter, H
    Fahsold, R
    Leistner, W
    Kaufmann, D
    Krone, W
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 1998, 62 (02) : 269 - 277