Origin of the native driving force for protein folding

被引:13
作者
Wang, ZH [1 ]
Lee, HC
机构
[1] Natl Cent Univ, Dept Phys, Chungli 320, Taiwan
[2] Natl Cent Univ, Ctr Complex Syst, Chungli 320, Taiwan
[3] Natl Ctr Theoret Sci, Hsinchu 300, Taiwan
关键词
D O I
10.1103/PhysRevLett.84.574
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We derive an expression with four adjustable parameters that reproduces well the 20 x 20 Miyazawa-Jernigan potential matrix extracted from known protein structures. The numerical values of the parameters can be approximately computed from the surface tension of water, water-screened dipole interactions between residues and water and among residues, and average exposures of residues in folded proteins. PACS numbers: 87.15.By, 02.10.Sp, 64.75.+g.
引用
收藏
页码:574 / 577
页数:4
相关论文
共 18 条
[1]  
Chan HS, 1996, PROTEINS, V24, P335, DOI 10.1002/(SICI)1097-0134(199603)24:3<335::AID-PROT6>3.0.CO
[2]  
2-F
[3]  
CHIPOT C, 1992, J PHYS CHEM-US, V96, P10277
[4]   Protein folding: Think globally, (inter)act locally [J].
Fersht, AR ;
Shakhnovich, EI .
CURRENT BIOLOGY, 1998, 8 (14) :R478-R479
[5]   Mapping the protein universe [J].
Holm, L ;
Sander, C .
SCIENCE, 1996, 273 (5275) :595-602
[6]   Structure-derived potentials and protein simulations [J].
Jernigan, RL ;
Bahar, I .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1996, 6 (02) :195-209
[7]   Empirical solvent-mediated potentials hold for both intra-molecular and inter-molecular inter-residue interactions [J].
Keskin, O ;
Bahar, I ;
Badretdinov, AY ;
Ptitsyn, OB ;
Jernigan, RL .
PROTEIN SCIENCE, 1998, 7 (12) :2578-2586
[8]   Nature of driving force for protein folding: A result from analyzing the statistical potential [J].
Li, H ;
Tang, C ;
Wingreen, NS .
PHYSICAL REVIEW LETTERS, 1997, 79 (04) :765-768
[9]   Emergence of preferred structures in a simple model of protein folding [J].
Li, H ;
Helling, R ;
Tang, C ;
Wingreen, N .
SCIENCE, 1996, 273 (5275) :666-669
[10]  
Li W.-H., 1997, MOL EVOLUTION