The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

被引：451

作者：

Nicol, John W. ^{[1
]}

Helt, Gregg A. ^{[2
]}

Blanchard, Steven G., Jr. ^{[1
]}

Raja, Archana ^{[1
]}

Loraine, Ann E. ^{[1
]}

机构：

[1] Univ N Carolina Charlotte, Dep Bioinformat & Genom, Kannapolis, NC 28081 USA

[2] Genomancer Consulting, Healdsburg, CA 95448 USA

来源：

BIOINFORMATICS | 2009年 / 25卷 / 20期

基金：

美国国家科学基金会;

关键词：

GENE-EXPRESSION; VISUALIZATION; PROMOTER; YEAST; CELLS;

D O I：

10.1093/bioinformatics/btp472

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Experimental techniques that survey an entire genome demand flexible, highly interactive visualization tools that can display new data alongside foundation datasets, such as reference gene annotations. The Integrated Genome Browser (IGB) aims to meet this need. IGB is an open source, desktop graphical display tool implemented in Java that supports real-time zooming and panning through a genome; layout of genomic features and datasets in moveable, adjustable tiers; incremental or genome-scale data loading from remote web servers or local files; and dynamic manipulation of quantitative data via genome graphs.

引用

页码：2730 / 2731

页数：2

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