Application of multivariate resolution methods to the study of biochemical and biophysical processes

被引:43
作者
Jaumot, J [1 ]
Vives, M [1 ]
Gargallo, R [1 ]
机构
[1] Univ Barcelona, Dept Quim Analit, E-08028 Barcelona, Spain
关键词
multivariate analysis; self modeling; multivariate resolution; singular value decomposition;
D O I
10.1016/j.ab.2003.12.028
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Multivariate resolution methods make up a set of mathematical tools that may be applied to the analysis and interpretation of spectroscopic data recorded when monitoring a physical or chemical process with multichannel detectors. The goal of resolution methods is the recovery of chemical and/or physical information from the experimental, data. Such data include, for example, the number of intermediates present in a reaction, the rate or equilibrium constants, and the spectra for each one of those intermediates. Multivariate resolution methods have been shown to be useful for the study of biophysical and biochemical processes such as folding/unfolding of proteins or nucleic acids. The present article reviews the most frequently used resolution methods, the limitations on their use, and their latest applications in protein and nucleic acid research. (C) 2004 Elsevier Inc. All rights reserved.
引用
收藏
页码:1 / 13
页数:13
相关论文
共 93 条
[21]   Investigation of equilibria in solution. Determination of equilibrium constants with the HYPERQUAD suite of programs [J].
Gans, P ;
Sabatini, A ;
Vacca, A .
TALANTA, 1996, 43 (10) :1739-1753
[22]   Protonation studies and multivariate curve resolution on oligodeoxynucleotides carrying the mutagenic base 2-aminopurine [J].
Gargallo, R ;
Vives, M ;
Tauler, R ;
Eritja, R .
BIOPHYSICAL JOURNAL, 2001, 81 (05) :2886-2896
[23]   TIME-RESOLVED OPTICAL-ABSORPTION STUDIES OF INTRAMOLECULAR ELECTRON-TRANSFER IN CYTOCHROME-C-OXIDASE [J].
GEORGIADIS, KE ;
JHON, NI ;
EINARSDOTTIR, O .
BIOCHEMISTRY, 1994, 33 (31) :9245-9256
[24]   On the mechanism of inhibition of cytochrome c oxidase by nitric oxide [J].
Giuffre, A ;
Sarti, P ;
DItri, E ;
Buse, G ;
Soulimane, T ;
Brunori, M .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1996, 271 (52) :33404-33408
[25]   Evidence for heme-heme excitonic coupling in the soret circular dichroism of hemoglobin [J].
Goldbeck, RA ;
Sagle, L ;
KimShapiro, DB ;
Flores, V ;
Kliger, DS .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1997, 235 (03) :610-614
[26]   NANOSECOND TIME-RESOLVED ABSORPTION AND POLARIZATION DICHROISM SPECTROSCOPIES [J].
GOLDBECK, RA ;
KLIGER, DS .
METALLOBIOCHEMISTRY, PART C, 1993, 226 :147-177
[27]  
Golub G.H., 2013, Matrix Computations, V4th
[28]   The progressive development of structure and stability during the equilibrium folding of the α subunit of tryptophan synthase from Escherichia coli [J].
Gualfetti, PJ ;
Bilsel, O ;
Matthews, CR .
PROTEIN SCIENCE, 1999, 8 (08) :1623-1635
[29]   Formation and stability of nucleotide complexes:: Raman titration investigation [J].
Hanus, J ;
Stepánek, J ;
Turpin, PY ;
Bok, J .
JOURNAL OF MOLECULAR STRUCTURE, 1999, 481 :437-442
[30]   Singular value decomposition of 3-D DNA melting curves reveals complexity in the melting process [J].
Haq, I ;
Chowdhury, BZ ;
Chaires, JB .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 1997, 26 (06) :419-426