Genome mosaicism and organismal lineages

被引：63

作者：

Zhaxybayeva, O ^{[1
]}

Lapierre, P ^{[1
]}

Gogarten, JP ^{[1
]}

机构：

[1] Univ Connecticut, Dept Mol & Cell Biol, Storrs, CT 06269 USA

来源：

TRENDS IN GENETICS | 2004年 / 20卷 / 05期

基金：

美国国家科学基金会; 美国国家航空航天局;

关键词：

D O I：

10.1016/j.tig.2004.03.009

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Some recently published genome-wide analyses of orthologous genes have found plurality consensus support for fully or partially resolved tree topologies. These findings were interpreted to discount the prevalence of horizontal gene transfer and the observed consensus was suggested to reflect organismal history. In this article, we explore the claim that methodological differences might have given rise to the conflicting findings and we show that horizontal gene transfer makes different contributions to the evolution in different classes of prokaryotes.

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收藏

页码：254 / 260

页数：7

相关论文

共 35 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[2] Lateral gene transfer and the origins of prokaryotic groups [J].

Boucher, Y ;

Douady, CJ ;

Papke, RT ;

Walsh, DA ;

Boudreau, MER ;

Nesbo, CL ;

Case, RJ ;

Doolittle, WF .

ANNUAL REVIEW OF GENETICS, 2003, 37 :283-328

[3] Eubacterial phylogeny based on translational apparatus proteins [J].

Brochier, C ;

Bapteste, E ;

Moreira, D ;

Philippe, H .

TRENDS IN GENETICS, 2002, 18 (01) :1-5

[4] Universal trees based on large combined protein sequence data sets [J].

Brown, JR ;

Douady, CJ ;

Italia, MJ ;

Marshall, WE ;

Stanhope, MJ .

NATURE GENETICS, 2001, 28 (03) :281-285

[5]

Brown JR., 2002, HORIZONTAL GENE TRAN, P305

[6] The source of laterally transferred genes in bacterial genomes -: art. no. R57 [J].

Daubin, V ;

Lerat, E ;

Perrière, G .

GENOME BIOLOGY, 2003, 4 (09)

[7] Phylogenetics and the cohesion of bacterial genomes [J].

Daubin, V ;

Moran, NA ;

Ochman, H .

SCIENCE, 2003, 301 (5634) :829-832

[8] Phylogenetic classification and the universal tree [J].

Doolittle, WF .

SCIENCE, 1999, 284 (5423) :2124-2128

[9] Homology - a personal view on some of the problems [J].

Fitch, WM .

TRENDS IN GENETICS, 2000, 16 (05) :227-231

[10] Prokaryotic evolution in light of gene transfer [J].

Gogarten, JP ;

Doolittle, WF ;

Lawrence, JG .

MOLECULAR BIOLOGY AND EVOLUTION, 2002, 19 (12) :2226-2238

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