Novel projected 4D triple resonance experiments for polypeptide backbone chemical shift assignment

被引:16
作者
Xia, YL
Arrowsmith, CH [1 ]
Szyperski, T
机构
[1] Univ Toronto, Ontario Canc Inst, Toronto, ON M5G 2M9, Canada
[2] Univ Toronto, Dept Med Biophys, Toronto, ON M5G 2M9, Canada
[3] SUNY Buffalo, Dept Chem, Buffalo, NY 14260 USA
关键词
automated protein NMR assignment; protein structure; reduced-dimensionality triple-resonance; experiments; resolution enhancement; structural genomics;
D O I
10.1023/A:1020605618150
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Here we present a novel suite of projected 4D triple-resonance NMR experiments for efficient sequential assignment of polypeptide backbone chemical shifts in C-13/N-15 doubly labeled proteins. In the 3D HNN[CAHA] and 3D HNN(CO)[CAHA] experiments, the C-13(alpha) and H-1(alpha) chemical shifts evolve in a common dimension and are simultaneously detected in quadrature. These experiments are particularly useful for the assignment of glycine-rich polypeptide segments. Appropriate setting of the H-1 radiofrequency carrier allows one to place cross peaks correlating either backbone N-15/H-1(N)/C-13(alpha) or N-15/H-1(N) /H-1(alpha) chemical shifts in separate spectral regions. Hence, peak overlap is not increased when compared with the conventional 3D HNNCA and HNN( CA) HA. 3D HNN[ CAHA] and 3DHNN(CO)[CAHA] are complemented by 3D reduced-dimensionality (RD) HNN COCA and HNN CACO, where C-13(alpha) and C-13' chemical shifts evolve in a common dimension. The C-13(alpha) shift is detected in quadrature, which yields peak pairs encoding the C-13' chemical shift in an in-phase splitting. This suite of four experiments promises to be of value for automated high-throughput NMR structure determination in structural genomics, where the requirement to independently sample many indirect dimensions in a large number of NMR experiments may prevent one from accurately adjusting NMR measurement times to spectrometer sensitivity.
引用
收藏
页码:41 / 50
页数:10
相关论文
共 39 条
  • [21] Protein NMR spectroscopy in structural genomics
    Montelione, GT
    Zheng, DY
    Huang, YPJ
    Gunsalus, KC
    Szyperski, T
    [J]. NATURE STRUCTURAL BIOLOGY, 2000, 7 (Suppl 11) : 982 - 985
  • [22] ACCURATE MEASUREMENTS OF HOMONUCLEAR H-N-H-ALPHA COUPLING-CONSTANTS IN POLYPEPTIDES USING HETERONUCLEAR 2D NMR EXPERIMENTS
    MONTELIONE, GT
    WAGNER, G
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1989, 111 (14) : 5474 - 5475
  • [23] Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data
    Moseley, HNB
    Monleon, D
    Montelione, GT
    [J]. NUCLEAR MAGNETIC RESONANCE OF BIOLOGICAL MACROMOLECULES, PT B, 2001, 339 : 91 - 108
  • [24] High-resolution detection of five frequencies in a single 3D spectrum: HNHCACO - a bidirectional coherence transfer experiment
    Pang, YX
    Zeng, L
    Kurochkin, AV
    Zuiderweg, ERP
    [J]. JOURNAL OF BIOMOLECULAR NMR, 1998, 11 (02) : 185 - 190
  • [25] SIMULTANEOUS ACQUISITION OF N-15-EDITED AND C-13-EDITED NOE SPECTRA OF PROTEINS DISSOLVED IN H2O
    PASCAL, SM
    MUHANDIRAM, DR
    YAMAZAKI, T
    FORMANKAY, JD
    KAY, LE
    [J]. JOURNAL OF MAGNETIC RESONANCE SERIES B, 1994, 103 (02): : 197 - 201
  • [26] SORENSEN OW, 1983, PROG NUCL MAG RES SP, V16, P163
  • [27] Useful information from axial peak magnetization in projected NMR experiments
    Szyperski, T
    Braun, D
    Banecki, B
    Wuthrich, K
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (34) : 8146 - 8147
  • [28] Reduced-dimensionality NMR spectroscopy for high-throughput protein resonance assignment
    Szyperski, T
    Yeh, DC
    Sukumaran, DK
    Moseley, HNB
    Montelione, GT
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (12) : 8009 - 8014
  • [29] 3D (H)UNDER-BAR(ALPHA/BETA)(C)UNDER-BAR(ALPHA/BETA)(CO)NHN, A PROJECTED 4D NMR EXPERIMENT FOR SEQUENTIAL CORRELATION OF POLYPEPTIDE H-1-(ALPHA/BETA), C-13(ALPHA/BETA) AND BACKBONE N-15 AND H-1(N) CHEMICAL-SHIFTS
    SZYPERSKI, T
    PELLECCHIA, M
    WUTHRICH, K
    [J]. JOURNAL OF MAGNETIC RESONANCE SERIES B, 1994, 105 (02): : 188 - 191
  • [30] SZYPERSKI T, 1993, J BIOMOL NMR, V3, P127