ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing

被引:227
作者
Jacob, Yannick [1 ]
Feng, Suhua [2 ,3 ]
LeBlanc, Chantal A. [1 ]
Bernatavichute, Yana V. [3 ,4 ]
Stroud, Hume [3 ]
Cokus, Shawn [3 ]
Johnson, Lianna M. [5 ]
Pellegrini, Matteo [3 ]
Jacobsen, Steven E. [2 ,3 ,4 ]
Michaels, Scott D. [1 ]
机构
[1] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA
[2] Univ Calif Los Angeles, Howard Hughes Med Inst, Los Angeles, CA 90024 USA
[3] Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90024 USA
[4] Univ Calif Los Angeles, Inst Mol Biol, Los Angeles, CA 90024 USA
[5] Univ Calif Los Angeles, Life Sci Core Curriculum, Los Angeles, CA 90024 USA
关键词
HISTONE H3 METHYLATION; POLYCOMB-GROUP PROTEINS; SET-DOMAIN PROTEINS; DNA METHYLATION; EPIGENETIC INHERITANCE; LYSINE-9; METHYLATION; CPG METHYLATION; METHYLTRANSFERASE; MARKS; TRIMETHYLATION;
D O I
10.1038/nsmb.1611
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Constitutive heterochromatin in Arabidopsis thaliana is marked by repressive chromatin modifications, including DNA methylation, histone H3 dimethylation at Lys9 (H3K9me2) and monomethylation at Lys27 (H3K27me1). The enzymes catalyzing DNA methylation and H3K9me2 have been identified; alterations in these proteins lead to reactivation of silenced heterochromatic elements. The enzymes responsible for heterochromatic H3K27me1, in contrast, remain unknown. Here we show that the divergent SET-domain proteins ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (ATXR5) and ATXR6 have H3K27 monomethyltransferase activity, and atxr5 atxr6 double mutants have reduced H3K27me1 in vivo and show partial heterochromatin decondensation. Mutations in atxr5 and atxr6 also lead to transcriptional activation of repressed heterochromatic elements. Notably, H3K9me2 and DNA methylation are unaffected in double mutants. These results indicate that ATXR5 and ATXR6 form a new class of H3K27 methyltransferases and that H3K27me1 represents a previously uncharacterized pathway required for transcriptional repression in Arabidopsis.
引用
收藏
页码:763 / U96
页数:7
相关论文
共 55 条
[1]   Genome-wide Insertional mutagenesis of Arabidopsis thaliana [J].
Alonso, JM ;
Stepanova, AN ;
Leisse, TJ ;
Kim, CJ ;
Chen, HM ;
Shinn, P ;
Stevenson, DK ;
Zimmerman, J ;
Barajas, P ;
Cheuk, R ;
Gadrinab, C ;
Heller, C ;
Jeske, A ;
Koesema, E ;
Meyers, CC ;
Parker, H ;
Prednis, L ;
Ansari, Y ;
Choy, N ;
Deen, H ;
Geralt, M ;
Hazari, N ;
Hom, E ;
Karnes, M ;
Mulholland, C ;
Ndubaku, R ;
Schmidt, I ;
Guzman, P ;
Aguilar-Henonin, L ;
Schmid, M ;
Weigel, D ;
Carter, DE ;
Marchand, T ;
Risseeuw, E ;
Brogden, D ;
Zeko, A ;
Crosby, WL ;
Berry, CC ;
Ecker, JR .
SCIENCE, 2003, 301 (5633) :653-657
[2]   The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes [J].
Baumbusch, LO ;
Thorstensen, T ;
Krauss, V ;
Fischer, A ;
Naumann, K ;
Assalkhou, R ;
Schulz, I ;
Reuter, G ;
Aalen, RB .
NUCLEIC ACIDS RESEARCH, 2001, 29 (21) :4319-4333
[3]   Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing [J].
Cao, XF ;
Jacobsen, SE .
CURRENT BIOLOGY, 2002, 12 (13) :1138-1144
[4]   Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes [J].
Cao, XF ;
Jacobsen, SE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 :16491-16498
[5]   Interaction of polycomb-group proteins controlling flowering in Arabidopsis [J].
Chanvivattana, Y ;
Bishopp, A ;
Schubert, D ;
Stock, C ;
Moon, YH ;
Sung, ZR ;
Goodrich, J .
DEVELOPMENT, 2004, 131 (21) :5263-5276
[6]   Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [J].
Cokus, Shawn J. ;
Feng, Suhua ;
Zhang, Xiaoyu ;
Chen, Zugen ;
Merriman, Barry ;
Haudenschild, Christian D. ;
Pradhan, Sriharsa ;
Nelson, Stanley F. ;
Pellegrini, Matteo ;
Jacobsen, Steven E. .
NATURE, 2008, 452 (7184) :215-219
[7]   A PHD-Polycomb Repressive Complex 2 triggers the epigenetic silencing of FLC during vernalization [J].
De Lucia, Filomena ;
Crevillen, Pedro ;
Jones, Alexandra M. E. ;
Greb, Thomas ;
Dean, Caroline .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (44) :16831-16836
[8]   Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase [J].
Ebbs, ML ;
Bender, J .
PLANT CELL, 2006, 18 (05) :1166-1176
[9]   H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases [J].
Ebbs, ML ;
Bartee, L ;
Bender, J .
MOLECULAR AND CELLULAR BIOLOGY, 2005, 25 (23) :10507-10515
[10]   Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replication [J].
Esteve, Pierre-Olivier ;
Chin, Hang Gyeong ;
Smallwood, Andrea ;
Feehery, George R. ;
Gangisetty, Omkaram ;
Karpf, Adam R. ;
Carey, Michael F. ;
Pradhan, Sriharsa .
GENES & DEVELOPMENT, 2006, 20 (22) :3089-3103