Plant genome sequencing - applications for crop improvement

被引：127

作者：

Bolger, Marie E. ^{[1
]}

Weisshaar, Bernd ^{[2
]}

Scholz, Uwe ^{[3
]}

Stein, Nils ^{[3
]}

Usadel, Bjoern ^{[1
,4
]}

Mayer, Klaus F. X. ^{[5
]}

机构：

[1] Rhein Westfal TH Aachen, IBMG, Aachen, Germany

[2] Univ Bielefeld, CeBiTec, Dept Biol, D-33615 Bielefeld, Germany

[3] Leibniz Inst Plant Genet & Crop Plant Res IPK, Gatersleben, Germany

[4] Forschungszentrum Julich, IBG2 Plant Sci, Inst Bio & Geosci, D-52425 Julich, Germany

[5] Helmholtz Ctr Munich, MIPS, Inst Bioinformat & Syst Biol, Neuherberg, Germany

来源：

CURRENT OPINION IN BIOTECHNOLOGY | 2014年 / 26卷

关键词：

ZINC-FINGER PROTEIN; DRAFT GENOME; GRAIN PRODUCTION; RICE; EVOLUTION; MAIZE; MAP; L; DIVERSITY; DYNAMICS;

D O I：

10.1016/j.copbio.2013.08.019

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

It is over 10 years since the genome sequence of the first crop was published. Since then, the number of crop genomes sequenced each year has increased steadily. The amazing pace at which genome sequences are becoming available is largely due to the improvement in sequencing technologies both in terms of cost and speed. Modern sequencing technologies allow the sequencing of multiple cultivars of smaller crop genomes at a reasonable cost. Though many of the published genomes are considered incomplete, they nevertheless have proved a valuable tool to understand important crop traits such as fruit ripening, grain traits and flowering time adaptation.

引用

页码：31 / 37

页数：7

共 51 条

[1] The genome of Theobroma cacao [J].

Argout, Xavier ;

Salse, Jerome ;

Aury, Jean-Marc ;

Guiltinan, Mark J. ;

Droc, Gaetan ;

Gouzy, Jerome ;

Allegre, Mathilde ;

Chaparro, Cristian ;

Legavre, Thierry ;

Maximova, Siela N. ;

Abrouk, Michael ;

Murat, Florent ;

Fouet, Olivier ;

Poulain, Julie ;

Ruiz, Manuel ;

Roguet, Yolande ;

Rodier-Goud, Maguy ;

Barbosa-Neto, Jose Fernandes ;

Sabot, Francois ;

Kudrna, Dave ;

Ammiraju, Jetty Siva S. ;

Schuster, Stephan C. ;

Carlson, John E. ;

Sallet, Erika ;

Schiex, Thomas ;

Dievart, Anne ;

Kramer, Melissa ;

Gelley, Laura ;

Shi, Zi ;

Berard, Aurelie ;

Viot, Christopher ;

Boccara, Michel ;

Risterucci, Ange Marie ;

Guignon, Valentin ;

Sabau, Xavier ;

Axtell, Michael J. ;

Ma, Zhaorong ;

Zhang, Yufan ;

Brown, Spencer ;

Bourge, Mickael ;

Golser, Wolfgang ;

Song, Xiang ;

Clement, Didier ;

Rivallan, Ronan ;

Tahi, Mathias ;

Akaza, Joseph Moroh ;

Pitollat, Bertrand ;

Gramacho, Karina ;

D'Hont, Angelique ;

Brunel, Dominique .

NATURE GENETICS, 2011, 43 (02) :101-108

[2] Cytokinin oxidase regulates rice grain production [J].

Ashikari, M ;

Sakakibara, H ;

Lin, SY ;

Yamamoto, T ;

Takashi, T ;

Nishimura, A ;

Angeles, ER ;

Qian, Q ;

Kitano, H ;

Matsuoka, M .

SCIENCE, 2005, 309 (5735) :741-745

[3] A 48 SNP set for grapevine cultivar identification [J].

Cabezas, Jose A. ;

Ibanez, Javier ;

Lijavetzky, Diego ;

Velez, Dolores ;

Bravo, Gema ;

Rodriguez, Virginia ;

Carreno, Ivan ;

Jermakow, Angelica M. ;

Carreno, Juan ;

Ruiz-Garcia, Leonor ;

Thomas, Mark R. ;

Martinez-Zapater, Jose M. .

BMC PLANT BIOLOGY, 2011, 11

[4]

Chin CS, 2013, NAT METHODS, V10, P563, DOI [10.1038/NMETH.2474, 10.1038/nmeth.2474]

[5] The banana (Musa acuminata) genome and the evolution of monocotyledonous plants [J].

D'Hont, Angelique ;

Denoeud, France ;

Aury, Jean-Marc ;

Baurens, Franc-Christophe ;

Carreel, Francoise ;

Garsmeur, Olivier ;

Noel, Benjamin ;

Bocs, Stephanie ;

Droc, Gaetan ;

Rouard, Mathieu ;

Da Silva, Corinne ;

Jabbari, Kamel ;

Cardi, Celine ;

Poulain, Julie ;

Souquet, Marlene ;

Labadie, Karine ;

Jourda, Cyril ;

Lengelle, Juliette ;

Rodier-Goud, Marguerite ;

Alberti, Adriana ;

Bernard, Maria ;

Correa, Margot ;

Ayyampalayam, Saravanaraj ;

Mckain, Michael R. ;

Leebens-Mack, Jim ;

Burgess, Diane ;

Freeling, Mike ;

Mbeguie-A-Mbeguie, Didier ;

Chabannes, Matthieu ;

Wicker, Thomas ;

Panaud, Olivier ;

Barbosa, Jose ;

Hribova, Eva ;

Heslop-Harrison, Pat ;

Habas, Remy ;

Rivallan, Ronan ;

Francois, Philippe ;

Poiron, Claire ;

Kilian, Andrzej ;

Burthia, Dheema ;

Jenny, Christophe ;

Bakry, Frederic ;

Brown, Spencer ;

Guignon, Valentin ;

Kema, Gert ;

Dita, Miguel ;

Waalwijk, Cees ;

Joseph, Steeve ;

Dievart, Anne ;

Jaillon, Olivier .

NATURE, 2012, 488 (7410) :213-+

[6] Integrating cereal genomics to support innovation in the Triticeae [J].

Feuillet, C. ;

Stein, N. ;

Rossini, L. ;

Praud, S. ;

Mayer, K. ;

Schulman, A. ;

Eversole, K. ;

Appels, R. .

FUNCTIONAL & INTEGRATIVE GENOMICS, 2012, 12 (04) :573-583

[7] Future Scenarios for Plant Phenotyping [J].

Fiorani, Fabio ;

Schurr, Ulrich .

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64, 2013, 64 :267-291

[8] Imaging plants dynamics in heterogenic environments [J].

Fiorani, Fabio ;

Rascher, Uwe ;

Jahnke, Siegfried ;

Schurr, Ulrich .

CURRENT OPINION IN BIOTECHNOLOGY, 2012, 23 (02) :227-235

[9] The genome of melon (Cucumis melo L.) [J].

Garcia-Mas, Jordi ;

Benjak, Andrej ;

Sanseverino, Walter ;

Bourgeois, Michael ;

Mir, Gisela ;

Gonzalez, Victor M. ;

Henaff, Elizabeth ;

Camara, Francisco ;

Cozzuto, Luca ;

Lowy, Ernesto ;

Alioto, Tyler ;

Capella-Gutierrez, Salvador ;

Blanca, Jose ;

Canizares, Joaquin ;

Ziarsolo, Pello ;

Gonzalez-Ibeas, Daniel ;

Rodriguez-Moreno, Luis ;

Droege, Marcus ;

Du, Lei ;

Alvarez-Tejado, Miguel ;

Lorente-Galdos, Belen ;

Mele, Marta ;

Yang, Luming ;

Weng, Yiqun ;

Navarro, Arcadi ;

Marques-Bonet, Tomas ;

Aranda, Miguel A. ;

Nuez, Fernando ;

Pico, Belen ;

Gabaldon, Toni ;

Roma, Guglielmo ;

Guigo, Roderic ;

Casacuberta, Josep M. ;

Arus, Pere ;

Puigdomenech, Pere .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (29) :11872-11877

[10] Field guide to next-generation DNA sequencers [J].

Glenn, Travis C. .

MOLECULAR ECOLOGY RESOURCES, 2011, 11 (05) :759-769

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