Enhancing crystal-structure prediction with NMR tensor data

被引:43
作者
Harper, James K. [1 ]
Grant, David M. [1 ]
机构
[1] Univ Utah, Dept Chem, Salt Lake City, UT 84112 USA
关键词
CHEMICAL-SHIFT TENSORS; SOLID-STATE NMR; MOLECULAR PACKING ANALYSIS; POWDER DIFFRACTION DATA; SHIELDING TENSORS; C-13; BENZENE; N-15; POLYMORPHS; PEPTIDES;
D O I
10.1021/cg060244g
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A method for selecting high-probability structures from numerous computer-generated crystal structures is described. This procedure evaluates structures by comparing computed NMR shifts for each predicted structure to experimental solid-state NMR data. Four carbohydrates are evaluated: methyl beta-D-galactopyranoside, methyl alpha-D-glucopyranoside, methyl alpha-D-mannopyranoside, and methyl beta-D-xylopyranoside. In these cases, 81.8% of the structures retained as probable fits by lattice energy comparisons are eliminated by the NMR criterion using tensor principal values. This analysis also ranks the correct structure as the best-fit for methyl alpha-D-glucopyranoside and usually places the correct structure among the top five in other cases. Isotropic shift comparisons are less successful in selecting structure. The NMR analysis is sufficiently sensitive to identify a 30 degrees error in one torsion angle of the purported correct structure of methyl beta-D-galactopyranoside. In this case, it is found that none of the 164 computer-generated structures match experimental data. The substances investigated experience only weak electrostatic fields; therefore, the NMR analysis chooses primarily by molecular conformation rather than lattice structure. NMR data thus provide a valuable independent selection criterion. The presence of strong electrostatic fields in polar samples can alter the results given here, and likely changes in the selection process are discussed.
引用
收藏
页码:2315 / 2321
页数:7
相关论文
共 63 条
[51]   Experimental and theoretical investigation of the 13C and 15N chemical shift tensors in melanostatin-exploring the chemical shift tensor as a structural probe [J].
Strohmeier, M ;
Grant, DM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (03) :966-977
[52]   The calculation of 13C chemical shielding tensors in ionic compounds utilizing point charge arrays obtained from Ewald lattice sums [J].
Stueber, D ;
Guenneau, FN ;
Grant, DM .
JOURNAL OF CHEMICAL PHYSICS, 2001, 114 (21) :9236-9243
[53]   Carbon-13 NMR shielding in the twenty common amino acids: Comparisons with experimental results in proteins [J].
Sun, HH ;
Sanders, LK ;
Oldfield, E .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (19) :5486-5495
[54]   High pressure solid phases of benzene .3. Molecular packing analysis of the crystalline structures of C6H6 [J].
Thiery, MM ;
Rerat, C .
JOURNAL OF CHEMICAL PHYSICS, 1996, 104 (22) :9079-9089
[55]  
van Eijck BP, 1999, J COMPUT CHEM, V20, P799, DOI 10.1002/(SICI)1096-987X(199906)20:8<799::AID-JCC6>3.0.CO
[56]  
2-Z
[57]   Hypothetical crystal structures of benzene at 0 and 30 kbar [J].
van Eijck, BP ;
Spek, AL ;
Mooij, WTM ;
Kroon, J .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1998, 54 :291-299
[58]   Crystal structure prediction for six monosaccharides revisited [J].
van Eijck, BP ;
Mooij, WTM ;
Kroon, J .
JOURNAL OF PHYSICAL CHEMISTRY B, 2001, 105 (43) :10573-10578
[59]  
Verwer P, 1998, REV COMP CH, V12, P327, DOI 10.1002/9780470125892.ch7
[60]  
WASYLISHEN RE, 2004, CALCULATIONS NMR EPR